RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 MCTP2Q6DN12 878 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 USP53Q70EK8 1073 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 JAM3Q9BX67 310 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 PCDH18Q9HCL0 1135 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 DDX56Q9NY93 547 aaKnown RBP4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 PPARGC1AQ9UBK2 798 aaKnown RBP4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 FAM221BA6H8Z2 402 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 DDX3XO00571 662 aaKnown RBP eCLIP4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 NKX3-2P78367 333 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 ADAM9Q13443 819 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 PRR31Q5SQ13 230 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 TTLL6Q8N841 843 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 TOE1Q96GM8 510 aaKnown RBP4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 ZSWIM3Q96MP5 696 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 DTLQ9NZJ0 730 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 PCDHB4Q9Y5E5 795 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 PRODHO43272 600 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 DGKIO75912 1065 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 STK10O94804 968 aaKnown RBP4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 LRG1P02750 347 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 HSP90AA2PQ14568 343 aaPredicted RBP4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 CHRNA2Q15822 529 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 EMC4Q5J8M3 183 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 TEPPQ6URK8 271 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 KCNT2Q6UVM3 1135 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 TXNDC5Q8NBS9 432 aaKnown RBP4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 PHF20Q9BVI0 1012 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 CSRNP2Q9H175 543 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 EPB41L1Q9H4G0 881 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 GPR27Q9NS67 375 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 WASF3Q9UPY6 502 aa4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 THRAP3Q9Y2W1 955 aaKnown RBP4.32□□□□□ -1.72
DEPDC1-204ENST00000489862 BLACEA4D250 179 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 ENPP3O14638 875 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 U2SURPO15042 1029 aaKnown RBP4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 FBLP22087 321 aaKnown RBP4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 NTRK3Q16288 839 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 HS1BP3Q53T59 392 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 TAF7LQ5H9L4 462 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 GORABQ5T7V8 394 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 FMNL3Q8IVF7 1028 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 RBM12BQ8IXT5 1001 aaKnown RBP4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 PIP4K2CQ8TBX8 421 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 SGSM3Q96HU1 749 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 AARSD1Q9BTE6 412 aaKnown RBP4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 FAM126AQ9BYI3 521 aaPredicted RBP4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 NGRNQ9NPE2 291 aaKnown RBP4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 ARHGEF4Q9NR80 690 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 MYOTQ9UBF9 498 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 RBPJLQ9UBG7 517 aa4.31□□□□□ -1.72
DEPDC1-204ENST00000489862 SLC27A2O14975 620 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 GPR42O15529 346 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 GRIN1Q05586 938 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 RAB33AQ14088 237 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 CCDC181Q5TID7 509 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 YOD1Q5VVQ6 348 aaPredicted RBP4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 PRAMEF18Q5VWM3 479 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 APBB1IPQ7Z5R6 666 aaPredicted RBP4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 OSBP2Q969R2 916 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 BRINP2Q9C0B6 783 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 SMOC1Q9H4F8 434 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 ASH2LQ9UBL3 628 aa4.3□□□□□ -1.72
DEPDC1-204ENST00000489862 ZNF623O75123 536 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 CLSTN1O94985 981 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 PABPC1P11940 636 aaKnown RBP4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 COL6A2P12110 1019 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 IBSPP21815 317 aaPredicted RBP4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 IL13P35225 146 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 MLLT6P55198 1093 aaPredicted RBP4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 TBX4P57082 545 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 EVA1CP58658 441 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 RASA3Q14644 834 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 RNF187Q5TA31 235 aaPredicted RBP4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 TMC5Q6UXY8 1006 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 NSMFQ6X4W1 530 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 CLEC4DQ8WXI8 215 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 ZNF503Q96F45 646 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 SLC6A20Q9NP91 592 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 CROTQ9UKG9 612 aa4.29□□□□□ -1.72
DEPDC1-204ENST00000489862 IQCA1LA6NCM1 817 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 KRIT1O00522 736 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 DNAJC6O75061 913 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 LTFP02788 710 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 FGFR1P11362 822 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 ZNF28P17035 718 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 PHF19Q5T6S3 580 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 RSPO2Q6UXX9 243 aaPredicted RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 LBX2Q6XYB7 198 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 RNF207Q6ZRF8 634 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 OTOP3Q7RTS5 596 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 ST13P5Q8NFI4 369 aaPredicted RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 PHOSPHO1Q8TCT1 267 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 DCAF4Q8WV16 495 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 NEU4Q8WWR8 484 aaPredicted RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 JDP2Q8WYK2 163 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 TSR2Q969E8 191 aaKnown RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 MRFAP1L1Q96HT8 127 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 LCORQ96JN0 433 aaPredicted RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 CLIC6Q96NY7 704 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms