RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ANKK1Q8NFD2 765 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 LENG9Q96B70 501 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 RIT2Q99578 217 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 JPH1Q9HDC5 661 aaPredicted RBP11.62□□□□□ -0.55
SKA1-204ENST00000488454 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.62□□□□□ -0.55
SKA1-204ENST00000488454 HCSTQ9UBK5 93 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 PCDHA12Q9UN75 941 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 TULP1O00294 542 aaPredicted RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 KPNA6O60684 536 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 OR52Z1P0C646 297 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 DDIT3P35638 169 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 GJA9P57773 515 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 KRT76Q01546 638 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 CEBPZQ03701 1054 aaKnown RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 ARHGAP1Q07960 439 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 SF3A1Q15459 793 aaKnown RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 FSCN1Q16658 493 aaKnown RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 TMEM266Q2M3C6 531 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 DTHD1Q6ZMT9 781 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 PCSK9Q8NBP7 692 aaKnown RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 PPTC7Q8NI37 304 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 ETNPPLQ8TBG4 499 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 U2AF1L4Q8WU68 220 aaKnown RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 AFG1LQ8WV93 481 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 SEPT1Q8WYJ6 367 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 SLC5A5Q92911 643 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 EMID1Q96A84 441 aaPredicted RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 LENG1Q96BZ8 264 aaPredicted RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 RAB34Q9BZG1 259 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 KCNMB3Q9NPA1 279 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 TFIP11Q9UBB9 837 aaKnown RBP11.61□□□□□ -0.55
SKA1-204ENST00000488454 SLC9A2Q9UBY0 812 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 ZDHHC9Q9Y397 364 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 SAMM50Q9Y512 469 aa11.61□□□□□ -0.55
SKA1-204ENST00000488454 KBTBD13C9JR72 458 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 WNT7AO00755 349 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 ADCY6O43306 1168 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 PPFIA4O75335 1185 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 FARP2O94887 1054 aaPredicted RBP11.6□□□□□ -0.55
SKA1-204ENST00000488454 NCLP19338 710 aaKnown RBP11.6□□□□□ -0.55
SKA1-204ENST00000488454 GJA8P48165 433 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 ITGB3BPQ13352 177 aaPredicted RBP11.6□□□□□ -0.55
SKA1-204ENST00000488454 STK38Q15208 465 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 DGKDQ16760 1214 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 ZNF746Q6NUN9 644 aaPredicted RBP11.6□□□□□ -0.55
SKA1-204ENST00000488454 MIS18BP1Q6P0N0 1132 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 HAS1Q92839 578 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 MTMR9Q96QG7 549 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 UPF3AQ9H1J1 476 aaKnown RBP11.6□□□□□ -0.55
SKA1-204ENST00000488454 TMEM60Q9H2L4 133 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 TTC12Q9H892 705 aaPredicted RBP11.6□□□□□ -0.55
SKA1-204ENST00000488454 OGDHLQ9ULD0 1010 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 CLIC4Q9Y696 253 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 SYNRGQ9UMZ2 1314 aa11.6□□□□□ -0.55
SKA1-204ENST00000488454 LCTP09848 1927 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 A6NJR5 290 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 WDR64B1ANS9 1081 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 DHX15O43143 795 aaKnown RBP11.59□□□□□ -0.55
SKA1-204ENST00000488454 CHMP2AO43633 222 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 PSMD10O75832 226 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 PSAPP07602 524 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 MYL3P08590 195 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 PTGS1P23219 599 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 SFNP31947 248 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 PRPHP41219 470 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 TECP42680 631 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 JAK3P52333 1124 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 ACTR2P61160 394 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 KRT85P78386 507 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 ATP2C1P98194 919 aaPredicted RBP11.59□□□□□ -0.55
SKA1-204ENST00000488454 BEX3Q00994 111 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 DNM1Q05193 864 aaKnown RBP11.59□□□□□ -0.55
SKA1-204ENST00000488454 HIC1Q14526 733 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 LRRC41Q15345 812 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 KCNA10Q16322 511 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 HSDL1Q3SXM5 330 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 ARL6IP4Q66PJ3 421 aaKnown RBP11.59□□□□□ -0.55
SKA1-204ENST00000488454 MIER3Q7Z3K6 550 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 GPIHBP1Q8IV16 184 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 SMAP1Q8IYB5 467 aaPredicted RBP11.59□□□□□ -0.55
SKA1-204ENST00000488454 C4orf32Q8N8J7 132 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 KLHDC9Q8NEP7 349 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 GJA10Q969M2 543 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 VTI1AQ96AJ9 217 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 ABHD8Q96I13 439 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 USP28Q96RU2 1077 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 GPR20Q99678 358 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 TSEN34Q9BSV6 310 aaKnown RBP11.59□□□□□ -0.55
SKA1-204ENST00000488454 AZI2Q9H6S1 392 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 BCAS3Q9H6U6 928 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 POLR3EQ9NVU0 708 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 PCDHA10Q9Y5I2 948 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 ELP1O95163 1332 aa11.59□□□□□ -0.55
SKA1-204ENST00000488454 CCDC85CA6NKD9 419 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 DNM1LO00429 736 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 BACH1O14867 736 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 ADAMTS4O75173 837 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 MMP3P08254 477 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 TCF7P36402 384 aaPredicted RBP11.58□□□□□ -0.56
SKA1-204ENST00000488454 PTPN5P54829 565 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms