RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 IRAK3Q9Y616 596 aa7.56□□□□□ -1.2
USP48-209ENST00000487880 RASSF10A6NK89 507 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 H7C1D1 291 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 KRT37O76014 449 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 EYA4O95677 639 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 ADCYAP1R1P41586 468 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 LIMS1P48059 325 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 HTRA3P83110 453 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 SSPNQ14714 243 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 CATSPEREQ5SY80 951 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 LIPIQ6XZB0 460 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 LINC00482Q8N8I6 264 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 KIAA1958Q8N8K9 716 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 CHTF18Q8WVB6 975 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 DDX11Q96FC9 970 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 SLC38A3Q99624 504 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 SYT3Q9BQG1 590 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 H2AFY2Q9P0M6 372 aaPredicted RBP7.55□□□□□ -1.2
USP48-209ENST00000487880 BTBD7Q9P203 1132 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 RBPJLQ9UBG7 517 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 FAN1Q9Y2M0 1017 aa7.55□□□□□ -1.2
USP48-209ENST00000487880 PRAMEF25A6NGN4 478 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 NFIBO00712 420 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 AOAHP28039 575 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 LSSP48449 732 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 KIF11P52732 1056 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 ITGA1P56199 1179 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 AMPD3Q01432 767 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 CT47A1Q5JQC4 288 aaPredicted RBP7.54□□□□□ -1.2
USP48-209ENST00000487880 FAM129CQ86XR2 697 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 EFHBQ8N7U6 833 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 GPATCH3Q96I76 525 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 NOX5Q96PH1 765 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 BRINP2Q9C0B6 783 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 THG1LQ9NWX6 298 aaKnown RBP7.54□□□□□ -1.2
USP48-209ENST00000487880 SMG5Q9UPR3 1016 aaKnown RBP7.54□□□□□ -1.2
USP48-209ENST00000487880 SPO11Q9Y5K1 396 aa7.54□□□□□ -1.2
USP48-209ENST00000487880 TCAF2A6NFQ2 919 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 ZNF839A8K0R7 811 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 NEMP1O14524 444 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 FOXP2O15409 715 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 PLA2G1BP04054 148 aaKnown RBP7.53□□□□□ -1.2
USP48-209ENST00000487880 MMEP08473 750 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 CNGA1P29973 690 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 FNTBP49356 437 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 STRN3Q13033 797 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 ADAM9Q13443 819 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 DTX3Q8N9I9 347 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 ASB15Q8WXK1 588 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 TMEM209Q96SK2 561 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 ELF4Q99607 663 aaPredicted RBP7.53□□□□□ -1.2
USP48-209ENST00000487880 C11orf84Q9BUA3 381 aaPredicted RBP7.53□□□□□ -1.2
USP48-209ENST00000487880 ACSS2Q9NR19 701 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 COL4A3BPQ9Y5P4 624 aa7.53□□□□□ -1.2
USP48-209ENST00000487880 KRTAP4-8A0A0G2JLE6 195 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 TGM5O43548 720 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 ZEB2O60315 1214 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 FKBP9O95302 570 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 CYP17A1P05093 508 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 PI3P19957 117 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 OCRLQ01968 901 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 TMEM132BQ14DG7 1078 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 SART3Q15020 963 aaKnown RBP7.52□□□□□ -1.21
USP48-209ENST00000487880 ZNF174Q15697 407 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 PTPROQ16827 1216 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 VASNQ6EMK4 673 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 FKBP9P1Q75LS8 142 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 USP7Q93009 1102 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 TTC1Q99614 292 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 PCIF1Q9H4Z3 704 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 IFT22Q9H7X7 185 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 EMC7Q9NPA0 242 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 PCDH12Q9NPG4 1184 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 SPTLC3Q9NUV7 552 aa7.52□□□□□ -1.21
USP48-209ENST00000487880 BRINP1O60477 761 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 MPIG6BO95866 241 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 ENO2P09104 434 aaPredicted RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 SLC9A1P19634 815 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 KPNA1P52294 538 aaPredicted RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 LINC00310P59036 64 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 IL2P60568 153 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 NFKB2Q00653 900 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 CAP1Q01518 475 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 PFKPQ01813 784 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 RTP5Q14D33 572 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 ESRP1Q6NXG1 681 aaKnown RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 TMC5Q6UXY8 1006 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 CILP2Q8IUL8 1156 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 KYQ8NBH2 561 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 ZCRB1Q8TBF4 217 aaKnown RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 IGDCC4Q8TDY8 1250 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 FNIP1Q8TF40 1166 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 C16orf92Q96LL3 132 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 GPR101Q96P66 508 aaPredicted RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 CNOT6Q9ULM6 557 aaKnown RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 APOBEC2Q9Y235 224 aaKnown RBP7.51□□□□□ -1.21
USP48-209ENST00000487880 KCTD3Q9Y597 815 aa7.51□□□□□ -1.21
USP48-209ENST00000487880 PTX3P26022 381 aaPredicted RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 RAP1GAPP47736 663 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 ID4P47928 161 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms