RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KIF6Q6ZMV9 814 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 BLIDQ8IZY5 108 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 EIF1ADQ8N9N8 165 aaKnown RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 CENPTQ96BT3 561 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ANKRD27Q96NW4 1050 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 NLRP3Q96P20 1036 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 MAGEF1Q9HAY2 307 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 MLXIPLQ9NP71 852 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 SEPT11Q9NVA2 429 aaKnown RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 CHCHD3Q9NX63 227 aaKnown RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 NKIRAS1Q9NYS0 192 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ABCF2Q9UG63 623 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 SH3BP1Q9Y3L3 701 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 C2CD2Q9Y426 696 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 TULP1O00294 542 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 RTN3O95197 1032 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 LINGO3P0C6S8 592 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 SLC5A1P13866 664 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 SV2BQ7L1I2 683 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 OTUD6AQ7L8S5 288 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 SPATA21Q7Z572 469 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 LONP2Q86WA8 852 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 APLFQ8IW19 511 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 PPFIBP2Q8ND30 876 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 HELBQ8NG08 1087 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 GDAP1Q8TB36 358 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 HPS3Q969F9 1004 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 FAM89AQ96GI7 184 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 NUDCD1Q96RS6 583 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ZSCAN10Q96SZ4 725 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 NAP1L3Q99457 506 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 NEUROG2Q9H2A3 272 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 CUEDC2Q9H467 287 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ZHX3Q9H4I2 956 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 CEP72Q9P209 647 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 FBXO3Q9UK99 471 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 AGAP1Q9UPQ3 857 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ARL2BPQ9Y2Y0 163 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ATP6V0A2Q9Y487 856 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 COL22A1Q8NFW1 1626 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 MYO5AQ9Y4I1 1855 aaKnown RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 AFDNP55196 1824 aaKnown RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 DPPA5A6NC42 116 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 RASGRF2O14827 1237 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 AGTP01019 485 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 CNGA1P29973 690 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 ATP5DP30049 168 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 HNRNPH3P31942 346 aaKnown RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 FLT3P36888 993 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 GCLCP48506 637 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 INF2Q27J81 1249 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 MIIPQ5JXC2 388 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 FAM83BQ5T0W9 1011 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 BRINP3Q76B58 766 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 SYCE1Q8N0S2 351 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 EZH1Q92800 747 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 AMFRQ9UKV5 643 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 HEG1Q9ULI3 1381 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 BAZ2BQ9UIF8 2168 aaKnown RBP6.77□□□□□ -1.32
VPS13D-209ENST00000487188 CYP7A1P22680 504 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 INHBEP58166 350 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 DR1Q01658 176 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 SLC18A3Q16572 532 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 HEATR3Q7Z4Q2 680 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 CADPS2Q86UW7 1296 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 LCORLQ8N3X6 602 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 DNAJC9Q8WXX5 260 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 ARHGEF2Q92974 986 aaKnown RBP6.77□□□□□ -1.32
VPS13D-209ENST00000487188 PACSIN1Q9BY11 444 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.77□□□□□ -1.32
VPS13D-209ENST00000487188 SNX24Q9Y343 169 aa6.77□□□□□ -1.32
VPS13D-209ENST00000487188 ANKRD33BA6NCL7 494 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 H0YGN5 161 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 FGGP02679 453 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 PYGLP06737 847 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 ITGA6P23229 1130 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 USP11P51784 963 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 CCDC152Q4G0S7 254 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 RASIP1Q5U651 963 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 CNBD1Q8NA66 436 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 SLC17A8Q8NDX2 589 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 ANKS1AQ92625 1134 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 GPKOWQ92917 476 aaPredicted RBP eCLIP6.77□□□□□ -1.33
VPS13D-209ENST00000487188 DTNBP1Q96EV8 351 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 EDEM3Q9BZQ6 932 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 ZCWPW1Q9H0M4 648 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 VCX3BQ9H321 246 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 VCX3AQ9NNX9 186 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 PCDHGC5Q9Y5F6 944 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 NFS1Q9Y697 457 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 SPEF2Q9C093 1822 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 MYH6P13533 1939 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 PIK3C2AO00443 1686 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 SHBGP04278 402 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 PCCAP05165 728 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-209ENST00000487188 KRT18P05783 430 aaKnown RBP6.77□□□□□ -1.33
VPS13D-209ENST00000487188 RARAP10276 462 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 SKIP12755 728 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 PKN1Q16512 942 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms