RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TCHHQ07283 1943 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 EFCAB14O75071 495 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 CXCL10P02778 98 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 CKBP12277 381 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 U2AF2P26368 475 aaKnown RBP eCLIP19.28■□□□□ 0.68
VIM-205ENST00000485947 NLRP5P59047 1200 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 GNL2Q13823 731 aaKnown RBP19.28■□□□□ 0.68
VIM-205ENST00000485947 CEP55Q53EZ4 464 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 ATL3Q6DD88 541 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 DIS3L2Q8IYB7 885 aaKnown RBP19.28■□□□□ 0.68
VIM-205ENST00000485947 DAGLBQ8NCG7 672 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 DHX38Q92620 1227 aaKnown RBP19.28■□□□□ 0.68
VIM-205ENST00000485947 SLC9A7Q96T83 725 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 CDX2Q99626 313 aaPredicted RBP19.28■□□□□ 0.68
VIM-205ENST00000485947 ANO3Q9BYT9 981 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 PBX4Q9BYU1 374 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 TTYH1Q9H313 450 aaPredicted RBP19.28■□□□□ 0.68
VIM-205ENST00000485947 CXXC1Q9P0U4 656 aaPredicted RBP19.28■□□□□ 0.68
VIM-205ENST00000485947 KCNJ14Q9UNX9 436 aa19.28■□□□□ 0.68
VIM-205ENST00000485947 NFASCO94856 1347 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 NRCAMQ92823 1304 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 GOLGA6L22H0YM25 854 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 RPLP2P05387 115 aaKnown RBP19.27■□□□□ 0.68
VIM-205ENST00000485947 CYP3A4P08684 503 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 SMIM10L2AP0DMW4 78 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 SMIM10L2BP0DMW5 78 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 KRT2P35908 639 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 TRIM71Q2Q1W2 868 aaKnown RBP19.27■□□□□ 0.68
VIM-205ENST00000485947 FTOQ9C0B1 505 aaKnown RBP eCLIP19.27■□□□□ 0.68
VIM-205ENST00000485947 ZNF576Q9H609 170 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 KCNH7Q9NS40 1196 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 ERAP1Q9NZ08 941 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 PCDHA11Q9Y5I1 949 aa19.27■□□□□ 0.68
VIM-205ENST00000485947 MEIS1O00470 390 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 ATP9AO75110 1047 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 ATP2A2P16615 1042 aaKnown RBP19.26■□□□□ 0.67
VIM-205ENST00000485947 TCF7P36402 384 aaPredicted RBP19.26■□□□□ 0.67
VIM-205ENST00000485947 DEFB128Q7Z7B8 93 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 ATP6V0A1Q93050 837 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 SDF4Q9BRK5 362 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 RNPEPQ9H4A4 650 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 SMARCAD1Q9H4L7 1026 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 BCAS3Q9H6U6 928 aa19.26■□□□□ 0.67
VIM-205ENST00000485947 JPH1Q9HDC5 661 aaPredicted RBP19.26■□□□□ 0.67
VIM-205ENST00000485947 ABHD14A-ACY1A0A1B0GW23 586 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 ZBBXA8MT70 800 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 SORBS3O60504 671 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 COL9A1P20849 921 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 PTMSP20962 102 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 KRT85P78386 507 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 CNKSR3Q6P9H4 555 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 RPAINQ86UA6 219 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 NOSTRINQ8IVI9 506 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 REXO1Q8N1G1 1221 aaKnown RBP19.25■□□□□ 0.67
VIM-205ENST00000485947 MAFAQ8NHW3 353 aaPredicted RBP19.25■□□□□ 0.67
VIM-205ENST00000485947 PPP1R13LQ8WUF5 828 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 ZNF396Q96N95 335 aaPredicted RBP19.25■□□□□ 0.67
VIM-205ENST00000485947 SLC9A2Q9UBY0 812 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 PCDHA4Q9UN74 947 aa19.25■□□□□ 0.67
VIM-205ENST00000485947 DDX11L8A8MPP1 907 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 BTBD18B2RXH4 712 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 KIF28PB7ZC32 967 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 MCM4P33991 863 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 SLC26A2P50443 739 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 ADAM17P78536 824 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 ARHGAP4P98171 946 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 NPY5RQ15761 445 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 CSPP1Q1MSJ5 1256 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 TAF2Q6P1X5 1199 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 BLIDQ8IZY5 108 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 CRYGNQ8WXF5 182 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 SLC28A3Q9HAS3 691 aa19.24■□□□□ 0.67
VIM-205ENST00000485947 TANC1Q9C0D5 1861 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 GSTTP1A0A1W2PQM5 241 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 LGR5O75473 907 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 ZNF76P36508 570 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 SETQ01105 290 aaPredicted RBP19.23■□□□□ 0.67
VIM-205ENST00000485947 DNM1Q05193 864 aaKnown RBP19.23■□□□□ 0.67
VIM-205ENST00000485947 NFKBIBQ15653 356 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 UTP14CQ5TAP6 766 aaKnown RBP19.23■□□□□ 0.67
VIM-205ENST00000485947 AZI2Q9H6S1 392 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 AGO4Q9HCK5 861 aaKnown RBP19.23■□□□□ 0.67
VIM-205ENST00000485947 CFAP45Q9UL16 551 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 NCOR1O75376 2440 aa19.23■□□□□ 0.67
VIM-205ENST00000485947 RRN3P2A6NIE6 340 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 GRXCR1A8MXD5 290 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 RSPH10B2B2RC85 870 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 RSPH10BP0C881 870 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 THPOP40225 353 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 PBX2P40425 430 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 KCNJ6P48051 423 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 ZNF200P98182 395 aaPredicted RBP19.22■□□□□ 0.67
VIM-205ENST00000485947 HIC1Q14526 733 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 GPNMBQ14956 572 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 ZNF618Q5T7W0 954 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 TRAF7Q6Q0C0 670 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 FAM43BQ6ZT52 329 aaPredicted RBP19.22■□□□□ 0.67
VIM-205ENST00000485947 PLPPR4Q7Z2D5 763 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 GLG1Q92896 1179 aa19.22■□□□□ 0.67
VIM-205ENST00000485947 TNFRSF25Q93038 417 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms