RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	PFKFB2	O60825	505 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	CYP3A4	P08684	503 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	C6orf222	P0C671	652 aa	Predicted RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	SCG2	P13521	617 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	KCNA2	P16389	499 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	HOXC8	P31273	242 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	METAP2	P50579	478 aa	Known RBP eCLIP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	MRPL12	P52815	198 aa	Known RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	CCT2	P78371	535 aa	Known RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	FAAP100	Q0VG06	881 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	ITGB3BP	Q13352	177 aa	Predicted RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	TTLL4	Q14679	1199 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	FSCN1	Q16658	493 aa	Known RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	HSDL1	Q3SXM5	330 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	GNAS	Q5JWF2	1037 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	C9orf50	Q5SZB4	431 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	FAM109B	Q6ICB4	259 aa	Predicted RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	KCNV1	Q6PIU1	500 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	CXCL17	Q6UXB2	119 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	SYNE3	Q6ZMZ3	975 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	NFXL1	Q6ZNB6	911 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	C16orf59	Q7L2K0	433 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	SESTD1	Q86VW0	696 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	FAM126B	Q8IXS8	530 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	NECAB1	Q8N987	351 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	TNFRSF25	Q93038	417 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	GJA10	Q969M2	543 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	PCYT2	Q99447	389 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	PSTPIP2	Q9H939	334 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	SH3GLB2	Q9NR46	395 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	VPS54	Q9P1Q0	977 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	GTF3C3	Q9Y5Q9	886 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	NR2E3	Q9Y5X4	410 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	UBIAD1	Q9Y5Z9	338 aa		6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	6.57	□□□□□ -1.36
CUX1-208	ENST00000485792	XIRP2	A4UGR9	3374 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	RALGAPA2	Q2PPJ7	1873 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	FAM86B1	E9PN63	330 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MEIS1	O00470	390 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MAFG	O15525	162 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	DYNC1LI2	O43237	492 aa	Predicted RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	DHX16	O60231	1041 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	B4GALT4	O60513	344 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	KPNA6	O60684	536 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	PPFIA4	O75335	1185 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	ARHGEF15	O94989	841 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MMP3	P08254	477 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	FAM86B2	P0C5J1	330 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	ZNF286B	P0CG31	522 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	TXN	P10599	105 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	SREBF1	P36956	1147 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MAGEA10	P43363	369 aa	Predicted RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	FXR1	P51114	621 aa	Known RBP eCLIP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	TLE2	Q04725	743 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	STK3	Q13188	491 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MBTPS1	Q14703	1052 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	TRIM71	Q2Q1W2	868 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	TMEM259	Q4ZIN3	620 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	CELF3	Q5SZQ8	465 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	ARHGEF16	Q5VV41	709 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	DESI1	Q6ICB0	168 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	NOL8	Q76FK4	1167 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	NIPA1	Q7RTP0	329 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	SPRED2	Q7Z698	418 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	FCHSD1	Q86WN1	690 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	NSUN7	Q8NE18	718 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	PPTC7	Q8NI37	304 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	UIMC1	Q96RL1	719 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MPHOSPH6	Q99547	160 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	GLT8D2	Q9H1C3	349 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	PRDM9	Q9NQV7	894 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	PDRG1	Q9NUG6	133 aa		6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	SEC63	Q9UGP8	760 aa	Known RBP	6.56	□□□□□ -1.36
CUX1-208	ENST00000485792	MROH7	Q68CQ1	1323 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	STK36	Q9NRP7	1315 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792		A0A0C4DFX4	3053 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792		A0A0U1RQG5	324 aa	Predicted RBP	6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	DHX15	O43143	795 aa	Known RBP	6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	AP1G2	O75843	785 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	DXO	O77932	396 aa	Known RBP	6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	ATG7	O95352	703 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	CCNE2	O96020	404 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	F2	P00734	622 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	FOS	P01100	380 aa	Predicted RBP	6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	AR	P10275	920 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	JUND	P17535	347 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	CCND2	P30279	289 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	CIITA	P33076	1130 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	CPT1A	P50416	773 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	ADAM17	P78536	824 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	ZNF200	P98182	395 aa	Predicted RBP	6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	PTPN11	Q06124	597 aa	Predicted RBP	6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	RBL2	Q08999	1139 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	AP3B2	Q13367	1082 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	LAMC2	Q13753	1193 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	RASIP1	Q5U651	963 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	NFRKB	Q6P4R8	1299 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	HEATR3	Q7Z4Q2	680 aa		6.55	□□□□□ -1.36
CUX1-208	ENST00000485792	DAGLB	Q8NCG7	672 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms