RNA–Protein interactions for RNA: ENST00000477360.2

CLCNKA-205, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 5

Gene CLCNKA, Length 400 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-205ENST00000477360 KCNMB3Q9NPA1 279 aa13.98□□□□□ -0.17
CLCNKA-205ENST00000477360 DDX25Q9UHL0 483 aaKnown RBP13.98□□□□□ -0.17
CLCNKA-205ENST00000477360 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.98□□□□□ -0.17
CLCNKA-205ENST00000477360 MAFBQ9Y5Q3 323 aaPredicted RBP13.98□□□□□ -0.17
CLCNKA-205ENST00000477360 HBP1O60381 514 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 CD2BP2O95400 341 aaKnown RBP13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 CXCL10P02778 98 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 CSF2RAP15509 400 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 PPFIA1Q13136 1202 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 TRIM71Q2Q1W2 868 aaKnown RBP13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 UTP14CQ5TAP6 766 aaKnown RBP13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 LRCH2Q5VUJ6 765 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 OXER1Q8TDS5 423 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 ATP8B4Q8TF62 1192 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 LMBR1Q8WVP7 490 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 HERVK_113Q902F9 699 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 ATP6V0A1Q93050 837 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 TEKT3Q9BXF9 490 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 PPP1R12CQ9BZL4 782 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 PKD2L1Q9P0L9 805 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 CEP131Q9UPN4 1083 aa13.97□□□□□ -0.17
CLCNKA-205ENST00000477360 BTBD18B2RXH4 712 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 SORBS3O60504 671 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 DKC1O60832 514 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 EFCAB14O75071 495 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 BAIAP3O94812 1187 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 TDP2O95551 362 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 CKBP12277 381 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 ACTN1P12814 892 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 FXR1P51114 621 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 SMAD3P84022 425 aaKnown RBP13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 SP4Q02446 784 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 PPP2R5CQ13362 524 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 LETM2Q2VYF4 491 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 ZNF484Q5JVG2 852 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 FAM26DQ5JW98 314 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 TMEM240Q5SV17 173 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 FAM109BQ6ICB4 259 aaPredicted RBP13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 PIK3AP1Q6ZUJ8 805 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 LRRC8DQ7L1W4 858 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 C16orf59Q7L2K0 433 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 RSPH3Q86UC2 560 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 TRIM50Q86XT4 487 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 BBXQ8WY36 941 aaPredicted RBP13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 DHX38Q92620 1227 aaKnown RBP13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 ZNF302Q9NR11 478 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 GJB4Q9NTQ9 266 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 SQORQ9Y6N5 450 aa13.96□□□□□ -0.17
CLCNKA-205ENST00000477360 IGSF9BQ9UPX0 1349 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 TMEM265A0A087WTH1 108 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 POTEB3A0JP26 581 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 BAG4O95429 457 aaKnown RBP13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 FGBP02675 491 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 U2AF2P26368 475 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 EPHB4P54760 987 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 CHMP4BP1P59074 171 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 NR5A1Q13285 461 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 CUL4AQ13619 759 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 PLCB4Q15147 1175 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 SHHQ15465 462 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 GRIK4Q16099 956 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 PDXDC2PQ6P474 469 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 POTEBQ6S5H4 581 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 CCDC60Q8IWA6 550 aaPredicted RBP13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 NME8Q8N427 588 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 DISC1Q9NRI5 854 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 SETD4Q9NVD3 440 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 TUBE1Q9UJT0 475 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 TELO2Q9Y4R8 837 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 PPME1Q9Y570 386 aa13.95□□□□□ -0.18
CLCNKA-205ENST00000477360 UMODL1Q5DID0 1318 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 SMIM35A0A1B0GVV1 85 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 BACH1O14867 736 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 TREHO43280 583 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 CCNT1O60563 726 aaKnown RBP13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 INSRRP14616 1297 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 CCL23P55773 120 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 HIC1Q14526 733 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 MARCH8Q5T0T0 291 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 SWSAP1Q6NVH7 229 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 TRAF7Q6Q0C0 670 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 ZNF365Q70YC5 407 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 NOSTRINQ8IVI9 506 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 PHOSPHO2Q8TCD6 241 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 VWCEQ96DN2 955 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 INTS4Q96HW7 963 aaKnown RBP13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 RNPC3Q96LT9 517 aaKnown RBP13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 TRPC6Q9Y210 931 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 PCDHA2Q9Y5H9 948 aa13.94□□□□□ -0.18
CLCNKA-205ENST00000477360 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 RSPH10B2B2RC85 870 aa13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 K7ELQ4 463 aaPredicted RBP13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 MAGEB2O15479 319 aa13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 SLC37A4O43826 429 aa13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 RSPH10BP0C881 870 aa13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 C9orf50Q5SZB4 431 aa13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 USP38Q8NB14 1042 aa13.93□□□□□ -0.18
CLCNKA-205ENST00000477360 NRBP2Q9NSY0 501 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms