RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 SLFN12Q8IYM2 578 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 CCDC155Q8N6L0 562 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 CTAGE1Q96RT6 745 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 UNC45AQ9H3U1 944 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 ZNF302Q9NR11 478 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 DISC1Q9NRI5 854 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 SAMM50Q9Y512 469 aa17.26■□□□□ 0.35
SDC3-203ENST00000471567 KIF28PB7ZC32 967 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 PITPNM1O00562 1244 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 MARCH6O60337 910 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 PDCP20941 246 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 SWSAP1Q6NVH7 229 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 POTEDQ86YR6 584 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 CCDC60Q8IWA6 550 aaPredicted RBP17.25■□□□□ 0.35
SDC3-203ENST00000471567 TMEM199Q8N511 208 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 CAGE1Q8TC20 777 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 HAS1Q92839 578 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 GJA10Q969M2 543 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 PPP1R12CQ9BZL4 782 aa17.25■□□□□ 0.35
SDC3-203ENST00000471567 NOL7Q9UMY1 257 aaKnown RBP17.25■□□□□ 0.35
SDC3-203ENST00000471567 MAFBQ9Y5Q3 323 aaPredicted RBP17.25■□□□□ 0.35
SDC3-203ENST00000471567 LTBP2Q14767 1821 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 RRN3P2A6NIE6 340 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 NEMFO60524 1076 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 MARK3P27448 753 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 CYP2C18P33260 490 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 ADAM17P78536 824 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 ZNF200P98182 395 aaPredicted RBP17.24■□□□□ 0.35
SDC3-203ENST00000471567 FPGSQ05932 587 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 RBL2Q08999 1139 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 PPFIA1Q13136 1202 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 PPP2R5CQ13362 524 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 HIC1Q14526 733 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 PLCB4Q15147 1175 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 CALCRLQ16602 461 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 PDXDC2PQ6P474 469 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 MIER3Q7Z3K6 550 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 SERINC5Q86VE9 423 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 RETREG2Q8NC44 543 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 ATP6V0A1Q93050 837 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 UBE2OQ9C0C9 1292 aaKnown RBP17.24■□□□□ 0.35
SDC3-203ENST00000471567 SETD4Q9NVD3 440 aa17.24■□□□□ 0.35
SDC3-203ENST00000471567 COLQQ9Y215 455 aaPredicted RBP17.24■□□□□ 0.35
SDC3-203ENST00000471567 A0A1W2PPC1 479 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 POTEB3A0JP26 581 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 WNT7AO00755 349 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 HBP1O60381 514 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 ATP2B1P20020 1258 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 PPIGQ13427 754 aaKnown RBP eCLIP17.23■□□□□ 0.35
SDC3-203ENST00000471567 GRIK4Q16099 956 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 MCTP1Q6DN14 999 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 POTEBQ6S5H4 581 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 ATP8B4Q8TF62 1192 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 LMBR1Q8WVP7 490 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 GABBR1Q9UBS5 961 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 VAV3Q9UKW4 847 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 TRPC6Q9Y210 931 aa17.23■□□□□ 0.35
SDC3-203ENST00000471567 TREHO43280 583 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 CHMP2AO43633 222 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 INSRRP14616 1297 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 MCM7P33993 719 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 TTC38Q5R3I4 469 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 BBXQ8WY36 941 aaPredicted RBP17.22■□□□□ 0.35
SDC3-203ENST00000471567 DHX38Q92620 1227 aaKnown RBP17.22■□□□□ 0.35
SDC3-203ENST00000471567 FAM167AQ96KS9 214 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 MTMR9Q96QG7 549 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 WNT8AQ9H1J5 351 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 PCDHA12Q9UN75 941 aa17.22■□□□□ 0.35
SDC3-203ENST00000471567 UMODL1Q5DID0 1318 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 IGSF9BQ9UPX0 1349 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 COL1A2P08123 1366 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 MBLAC1A4D2B0 266 aaPredicted RBP17.21■□□□□ 0.35
SDC3-203ENST00000471567 CAND2O75155 1236 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 PARNO95453 639 aaKnown RBP17.21■□□□□ 0.35
SDC3-203ENST00000471567 ATP4AP20648 1035 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 CCL23P55773 120 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 ZNF174Q15697 407 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 TRIM71Q2Q1W2 868 aaKnown RBP17.21■□□□□ 0.35
SDC3-203ENST00000471567 RILPL1Q5EBL4 403 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 ZNF484Q5JVG2 852 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 TAF2Q6P1X5 1199 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 CKAP2LQ8IYA6 745 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 PCDH10Q9P2E7 1040 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 KAT6AQ92794 2004 aa17.21■□□□□ 0.35
SDC3-203ENST00000471567 EML1O00423 815 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 RPLP2P05387 115 aaKnown RBP17.2■□□□□ 0.34
SDC3-203ENST00000471567 IQCF3P0C7M6 154 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 CKBP12277 381 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 CSF2RAP15509 400 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 SELPP16109 830 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 RFC2P35250 354 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 TOB1P50616 345 aaPredicted RBP17.2■□□□□ 0.34
SDC3-203ENST00000471567 SPIRE1Q08AE8 756 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 EPHA7Q15375 998 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 MARCH8Q5T0T0 291 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 RPAINQ86UA6 219 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 RPUSD2Q8IZ73 545 aaKnown RBP17.2■□□□□ 0.34
SDC3-203ENST00000471567 TMEM60Q9H2L4 133 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 TTC12Q9H892 705 aaPredicted RBP17.2■□□□□ 0.34
SDC3-203ENST00000471567 IL23AQ9NPF7 189 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms