RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	SEC62	Q99442	399 aa	Known RBP	6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	UPF3B	Q9BZI7	483 aa	Known RBP	6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	CLEC1B	Q9P126	229 aa		6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	ARPP21	Q9UBL0	812 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	GTF2IRD1	Q9UHL9	959 aa		6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	SUPT16H	Q9Y5B9	1047 aa	Known RBP	6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	PCDHGC5	Q9Y5F6	944 aa		6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	KMT2B	Q9UMN6	2715 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-209	ENST00000469511	CEP250	Q9BV73	2442 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	PRR23A	A6NEV1	266 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	LOC730098	B7Z3J9	87 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	HAS3	O00219	553 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	IPO8	O15397	1037 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	ZNF286B	P0CG31	522 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	SKI	P12755	728 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	ATP5J	P18859	108 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	EDNRB	P24530	442 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	RRP1	P56182	461 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	RPS6	P62753	249 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	SKOR1	P84550	965 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	FOXK2	Q01167	660 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	PDE4B	Q07343	736 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	ADAM15	Q13444	863 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	PTPRO	Q16827	1216 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	MAP7D1	Q3KQU3	841 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	PLEKHG4	Q58EX7	1191 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	SEPT14	Q6ZU15	432 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	FAM160B2	Q86V87	743 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	SESTD1	Q86VW0	696 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	AMOTL1	Q8IY63	956 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	CHURC1	Q8WUH1	139 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	TOP1MT	Q969P6	601 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	EMID1	Q96A84	441 aa	Predicted RBP	6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	GMCL1	Q96IK5	515 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	TAAR1	Q96RJ0	339 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	HAUS7	Q99871	368 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	FSD1	Q9BTV5	496 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	RANBP17	Q9H2T7	1088 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	CPVL	Q9H3G5	476 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	SMOC2	Q9H3U7	446 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	BCAS3	Q9H6U6	928 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	COL20A1	Q9P218	1284 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	CTNNA3	Q9UI47	895 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	CD207	Q9UJ71	328 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	CDH22	Q9UJ99	828 aa		6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	FRMPD2	Q68DX3	1309 aa	Predicted RBP	6.25	□□□□□ -1.41
PTPN4-209	ENST00000469511	ESPN	B1AK53	854 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	PROB1	E7EW31	1015 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	FOXP2	O15409	715 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	SMARCA5	O60264	1052 aa	Predicted RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	KPNA6	O60684	536 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	PLA2G6	O60733	806 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	GLP2R	O95838	553 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	AMH	P03971	560 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	ICAM1	P05362	532 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	IFIT2	P09913	472 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	TSPY3	P0CV98	308 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	TSPY8	P0CW00	308 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	CTNNB1	P35222	781 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	ID4	P47928	161 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	PTK7	Q13308	1070 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	SMAD4	Q13485	552 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	CBX2	Q14781	532 aa	Predicted RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	KIAA0753	Q2KHM9	967 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	RNF20	Q5VTR2	975 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	ZKSCAN2	Q63HK3	967 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	TSHZ3	Q63HK5	1081 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	RNF207	Q6ZRF8	634 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	ITPRIP	Q8IWB1	547 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	SUGP1	Q8IWZ8	645 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	TMEM105	Q8N8V8	129 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	PLPP7	Q8NBV4	271 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	PANK1	Q8TE04	598 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	SCFD2	Q8WU76	684 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	RPGRIP1	Q96KN7	1286 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	YME1L1	Q96TA2	773 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	ADD3	Q9UEY8	706 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	BARX2	Q9UMQ3	279 aa	Predicted RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	MAP4K5	Q9Y4K4	846 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	TELO2	Q9Y4R8	837 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	MAP1B	P46821	2468 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	ZNF292	O60281	2723 aa		6.24	□□□□□ -1.41
PTPN4-209	ENST00000469511	BAZ2B	Q9UIF8	2168 aa	Known RBP	6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	PLIN4	Q96Q06	1357 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	RSPH10B2	B2RC85	870 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	NKRF	O15226	690 aa	Known RBP eCLIP	6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	TREH	O43280	583 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	GPAA1	O43292	621 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	ATG7	O95352	703 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	EYA4	O95677	639 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	CTSH	P09668	335 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	RSPH10B	P0C881	870 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	PDIA4	P13667	645 aa	Known RBP	6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	SP100	P23497	879 aa	Predicted RBP	6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	BMPR1A	P36894	532 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	THPO	P40225	353 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	PDE4C	Q08493	712 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	SIGLEC14	Q08ET2	396 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	LIAT1	Q6ZQX7	453 aa		6.23	□□□□□ -1.41
PTPN4-209	ENST00000469511	FRMD5	Q7Z6J6	570 aa		6.23	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms