RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SSU72P8A0A1W2PR75 194 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 C21orf2O43822 256 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CFBP00751 764 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CXCR5P32302 372 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 FAM193AP78312 1265 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 KNOP1Q1ED39 458 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 EDRF1Q3B7T1 1238 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 SLC9C1Q4G0N8 1177 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 NFRKBQ6P4R8 1299 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ZFP91Q96JP5 570 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 RPGRIP1Q96KN7 1286 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 EIF2AK1Q9BQI3 630 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 IGLV3-22A0A075B6J6 115 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 SFI1A8K8P3 1242 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 PJA2O43164 708 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 NCK2O43639 380 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 SERPING1P05155 500 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 ACTN1P12814 892 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 POLD1P28340 1107 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 EPS15P42566 896 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 STAT2P52630 851 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 UBXN2AP68543 259 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 KCNA1Q09470 495 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 RAPGEF1Q13905 1077 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 CCDC174Q6PII3 467 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 PPP4R3CPQ6ZMV5 832 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 EPM2AIP1Q7L775 607 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-217ENST00000466159 PIGOQ8TEQ8 1089 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 WDR18Q9BV38 432 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 SMARCAL1Q9NZC9 954 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 EHD2Q9NZN4 543 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 HDAC9Q9UKV0 1011 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 FAM184BQ9ULE4 1060 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 RBAK-RBAKDNI3L0D1 243 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 PIK3CDO00329 1044 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 ZBTB39O15060 712 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 CYP3A4P08684 503 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 CTTNQ14247 550 aaKnown RBP9.85□□□□□ -0.83
SYNE1-217ENST00000466159 SAMD1Q6SPF0 538 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-217ENST00000466159 ARHGAP27Q6ZUM4 889 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 FAM133AQ8N9E0 248 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 SYN2Q92777 582 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-217ENST00000466159 GDAP1L1Q96MZ0 367 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 ALS2CR12Q96Q35 445 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 OSBPL9Q96SU4 736 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 NUCKS1Q9H1E3 243 aaKnown RBP9.85□□□□□ -0.83
SYNE1-217ENST00000466159 TRAF3IP3Q9Y228 551 aa9.85□□□□□ -0.83
SYNE1-217ENST00000466159 ATAD5Q96QE3 1844 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 CHMP2AO43633 222 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 MYBL2P10244 700 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 SLC9A1P19634 815 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 NAP1L1P55209 391 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 MRPS25P82663 173 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 EZH2Q15910 746 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 ZYXQ15942 572 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 CDAN1Q8IWY9 1227 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 GSPT2Q8IYD1 628 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 GANQ9H2C0 597 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 IKZF4Q9H2S9 585 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 ADAMTS1Q9UHI8 967 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 ADAM21Q9UKJ8 722 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 RABGAP1Q9Y3P9 1069 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 A0A087X0T9 212 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 TARSL2A2RTX5 802 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 SPDYE2BA6NHP3 402 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 CLIC2O15247 247 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 EIF3JO75822 258 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 RAD17O75943 681 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 AKAP3O75969 853 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 GCNT3O95395 438 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 FAM228BP0C875 321 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 SPDYE6P0CI01 402 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 PRLRP16471 622 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 CASP4P49662 377 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 GPS2Q13227 327 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 KLHDC7AQ5VTJ3 777 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 OTOP1Q7RTM1 612 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 TPH2Q8IWU9 490 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 HDAC7Q8WUI4 952 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 NOX5Q96PH1 765 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 POLR3CQ9BUI4 534 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 TLR10Q9BXR5 811 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 ARHGEF10LQ9HCE6 1279 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 VPS18Q9P253 973 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 ARMCX3Q9UH62 379 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 HERC5Q9UII4 1024 aaKnown RBP9.84□□□□□ -0.83
SYNE1-217ENST00000466159 TMX2Q9Y320 296 aa9.84□□□□□ -0.83
SYNE1-217ENST00000466159 ASTN1O14525 1302 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 PDXKO00764 312 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 SLITRK3O94933 977 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 EYA4O95677 639 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 MATR3P43243 847 aaKnown RBP eCLIP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 TNNT3P45378 269 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 KLHL30Q0D2K2 578 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 DCAF17Q5H9S7 520 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 RINT1Q6NUQ1 792 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 DPY19L2P1Q6NXN4 242 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 FRMD5Q7Z6J6 570 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms