RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 FAM212AQ96EL1 285 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 BCS1LQ9Y276 419 aa13.64□□□□□ -0.23
HDAC4-208ENST00000463007 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.64□□□□□ -0.23
HDAC4-208ENST00000463007 C6orf229H3BNL8 230 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 MEFVO15553 781 aaPredicted RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 NPR1P16066 1061 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 GNA11P29992 359 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 PURBQ96QR8 312 aaKnown RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 CELF4Q9BZC1 486 aaKnown RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 C6orf50Q9HD87 102 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.63□□□□□ -0.233e-7■■■■■ 249
HDAC4-208ENST00000463007 DCDC2CA8MYV0 355 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 FLT3P36888 993 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 DCAF17Q5H9S7 520 aaPredicted RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 CDC42EP5Q6NZY7 148 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 B4GALNT4Q76KP1 1039 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 CCDC84Q86UT8 332 aaPredicted RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 LRRC47Q8N1G4 583 aaKnown RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 MDM1Q8TC05 714 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 NCAPGQ9BPX3 1015 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 C7orf25Q9BPX7 421 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 MXD3Q9BW11 206 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 TLR2O60603 784 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 PPP1R37O75864 691 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 ZNF543Q08ER8 600 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 GBP6Q6ZN66 633 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 NLRP14Q86W24 1093 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 KSR1Q8IVT5 923 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 SPAG5Q96R06 1193 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 CCDC113Q9H0I3 377 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 SEPT11Q9NVA2 429 aaKnown RBP13.63□□□□□ -0.23
HDAC4-208ENST00000463007 SWAP70Q9UH65 585 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 AMACRQ9UHK6 382 aa13.63□□□□□ -0.23
HDAC4-208ENST00000463007 SLURP2P0DP57 97 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 FXR2P51116 673 aaKnown RBP eCLIP13.62□□□□□ -0.237e-6■■□□□ 13.4
HDAC4-208ENST00000463007 KCNMA1Q12791 1236 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 GRB10Q13322 594 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 NBPF9Q3BBW0 867 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 ALS2CLQ60I27 953 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 PPP1R18Q6NYC8 613 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 EP400NLQ6ZTU2 488 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 CCDC91Q7Z6B0 441 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 REXO1Q8N1G1 1221 aaKnown RBP13.62□□□□□ -0.23
HDAC4-208ENST00000463007 CABS1Q96KC9 395 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 JMJD4Q9H9V9 463 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 NOVA2Q9UNW9 492 aaKnown RBP13.62□□□□□ -0.23
HDAC4-208ENST00000463007 PHF20L1A8MW92 1017 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 PLSCR1O15162 318 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 PDE6BP35913 854 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 CDR1P51861 262 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 SPRED3Q2MJR0 410 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 HERC4Q5GLZ8 1057 aaPredicted RBP13.62□□□□□ -0.23
HDAC4-208ENST00000463007 PDXDC1Q6P996 788 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 MYCBPAPQ8TBZ2 947 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 BAP1Q92560 729 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 LRRC4CQ9HCJ2 640 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 BLOC1S4Q9NUP1 217 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 SERPINB13Q9UIV8 391 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 GGT7Q9UJ14 662 aa13.62□□□□□ -0.23
HDAC4-208ENST00000463007 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.62□□□□□ -0.23
HDAC4-208ENST00000463007 E9PMD0 336 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 ITGA4P13612 1032 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 PICALMQ13492 652 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 TSG101Q99816 390 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 MRIQ9BWK5 157 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 GCOM1H8Y6P7 765 aaPredicted RBP13.61□□□□□ -0.23
HDAC4-208ENST00000463007 RIMBP2O15034 1052 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 RPSAP08865 295 aaKnown RBP13.61□□□□□ -0.23
HDAC4-208ENST00000463007 MYZAPP0CAP1 466 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 SLC16A2P36021 539 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 IFFO1Q0D2I5 559 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 PTGISQ16647 500 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 DPP8Q6V1X1 898 aaPredicted RBP13.61□□□□□ -0.23
HDAC4-208ENST00000463007 CCDC121Q6ZUS5 278 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 NLGN1Q8N2Q7 840 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 TBC1D31Q96DN5 1066 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 EPN3Q9H201 632 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 F8W031 263 aaPredicted RBP13.61□□□□□ -0.23
HDAC4-208ENST00000463007 DAPK3O43293 454 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 TTLL1O95922 423 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 ABCB4P21439 1286 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 MDH1P40925 334 aaKnown RBP13.61□□□□□ -0.23
HDAC4-208ENST00000463007 FKBP1AP62942 108 aaKnown RBP13.61□□□□□ -0.23
HDAC4-208ENST00000463007 RPS6KA1Q15418 735 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 ECM1Q16610 540 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 QPCTQ16769 361 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 KRT79Q5XKE5 535 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 CENPPQ6IPU0 288 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 IQCKQ8N0W5 287 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 ATP6V1G3Q96LB4 118 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 ZDHHC15Q96MV8 337 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 PNMA5Q96PV4 448 aa13.61□□□□□ -0.23
HDAC4-208ENST00000463007 MEIS1O00470 390 aa13.6□□□□□ -0.23
HDAC4-208ENST00000463007 SLC9A1P19634 815 aa13.6□□□□□ -0.23
HDAC4-208ENST00000463007 ERVK-9P63128 1117 aa13.6□□□□□ -0.23
HDAC4-208ENST00000463007 NFIAQ12857 509 aa13.6□□□□□ -0.23
HDAC4-208ENST00000463007 KRT71Q3SY84 523 aa13.6□□□□□ -0.23
HDAC4-208ENST00000463007 TRMT1LQ7Z2T5 733 aaKnown RBP13.6□□□□□ -0.23
HDAC4-208ENST00000463007 CPLX4Q7Z7G2 160 aa13.6□□□□□ -0.23
HDAC4-208ENST00000463007 MYOCDQ8IZQ8 938 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms