RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	PRC1	O43663	620 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	TBX10	O75333	385 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	MMP1	P03956	469 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	RXRA	P19793	462 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	MARK3	P27448	753 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.83	□□□□□ -0.36	1e-6	■□□□□ 10.7
PTPN7-204	ENST00000462815	TSHZ1	Q6ZSZ6	1077 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	ADHFE1	Q8IWW8	467 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	CTCFL	Q8NI51	663 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	DNAJB3	Q8WWF6	145 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	LZTS2	Q9BRK4	669 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	JADE2	Q9NQC1	790 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	ERAP1	Q9NZ08	941 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	CDY2A	Q9Y6F7	541 aa		12.83	□□□□□ -0.36
PTPN7-204	ENST00000462815	hCG_1642624	A0A1W2PR95	340 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	DNAJB1	P25685	340 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	SSTR3	P32745	418 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	KIF5B	P33176	963 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	LIFR	P42702	1097 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	MTMR1	Q13613	665 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	SMAD2	Q15796	467 aa	Known RBP	12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	TYW1B	Q6NUM6	668 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	TMTC3	Q6ZXV5	915 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	CUL5	Q93034	780 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	CDHR1	Q96JP9	859 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	C11orf84	Q9BUA3	381 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	PSTPIP2	Q9H939	334 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	CLDND1	Q9NY35	253 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	MYO7A	Q13402	2215 aa		12.82	□□□□□ -0.36
PTPN7-204	ENST00000462815	LINC01565	O15544	149 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	MBTPS2	O43462	519 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	DCX	O43602	365 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	ALAD	P13716	330 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	INSRR	P14616	1297 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	CD52	P31358	61 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	IRS1	P35568	1242 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	MRPS6	P82932	125 aa	Known RBP	12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	FUT2	Q10981	343 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	ITGB3BP	Q13352	177 aa	Predicted RBP	12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	CYP2W1	Q8TAV3	490 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	P2RX5	Q93086	422 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	TMEM87B	Q96K49	555 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	MSLNL	Q96KJ4	702 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	UIMC1	Q96RL1	719 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	PLVAP	Q9BX97	442 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	TMX1	Q9H3N1	280 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	SMARCAD1	Q9H4L7	1026 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	SEC63	Q9UGP8	760 aa	Known RBP	12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	PCDHA6	Q9UN73	950 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	PLAGL2	Q9UPG8	496 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	RWDD3	Q9Y3V2	267 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	PCDHA8	Q9Y5H6	950 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	MRPL42	Q9Y6G3	142 aa	Known RBP	12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	SQOR	Q9Y6N5	450 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	CNTNAP5	Q8WYK1	1306 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	IGSF9B	Q9UPX0	1349 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	ZNF318	Q5VUA4	2279 aa		12.81	□□□□□ -0.36
PTPN7-204	ENST00000462815	PLXNA4	Q9HCM2	1894 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	KAT6A	Q92794	2004 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	IGKV6D-21	A0A0A0MT36	114 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	SLC27A2	O14975	620 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	MAFG	O15525	162 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	NCK2	O43639	380 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	GNAQ	P50148	359 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	ADAM15	Q13444	863 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	BTG3	Q14201	252 aa	Predicted RBP	12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	PLCB4	Q15147	1175 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	NECTIN1	Q15223	517 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	WWC2	Q6AWC2	1192 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	EP400NL	Q6ZTU2	488 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	SGMS1	Q86VZ5	419 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	RAB11FIP4	Q86YS3	637 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	CMTR2	Q8IYT2	770 aa	Known RBP	12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	TRAPPC12	Q8WVT3	735 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	JPH1	Q9HDC5	661 aa	Predicted RBP	12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	KCNH7	Q9NS40	1196 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	PKD2L1	Q9P0L9	805 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	CLEC1B	Q9P126	229 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	PCDHA2	Q9Y5H9	948 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	NFASC	O94856	1347 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	KDM3A	Q9Y4C1	1321 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	MYO15A	Q9UKN7	3530 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	LOXHD1	Q8IVV2	1947 aa		12.8	□□□□□ -0.36
PTPN7-204	ENST00000462815	ATG7	O95352	703 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	EYA4	O95677	639 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	GLP2R	O95838	553 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	ITGB1	P05556	798 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	MCM5	P33992	734 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	IGBP1	P78318	339 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	SMAD4	Q13485	552 aa	Known RBP	12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	CASC1	Q6TDU7	716 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	ADGRD2	Q7Z7M1	963 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	RSPH3	Q86UC2	560 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	ALYREF	Q86V81	257 aa	Known RBP	12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	NPAS4	Q8IUM7	802 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	FANCB	Q8NB91	859 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	SPPL3	Q8TCT6	385 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	GLG1	Q92896	1179 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	MXRA8	Q9BRK3	442 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	LRRC2	Q9BYS8	371 aa		12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms