RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PSMD10O75832 226 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 CCNE2O96020 404 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 PSAPP07602 524 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 PFKMP08237 780 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 GJB2P29033 226 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 TRAPPC10P48553 1259 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 MDM2Q00987 491 aaPredicted RBP13.4□□□□□ -0.26
VPS52-213ENST00000461743 PSRC1Q6PGN9 363 aaPredicted RBP13.4□□□□□ -0.26
VPS52-213ENST00000461743 NOSTRINQ8IVI9 506 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 SLFN12Q8IYM2 578 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 TDHQ8IZJ6 230 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 BADQ92934 168 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 SNX21Q969T3 373 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 INTS4Q96HW7 963 aaKnown RBP13.4□□□□□ -0.26
VPS52-213ENST00000461743 FAM167AQ96KS9 214 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 SMC3Q9UQE7 1217 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 COLQQ9Y215 455 aaPredicted RBP13.4□□□□□ -0.26
VPS52-213ENST00000461743 PCDHA10Q9Y5I2 948 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 PTPRSQ13332 1948 aa13.4□□□□□ -0.26
VPS52-213ENST00000461743 RRN3P2A6NIE6 340 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 K7ELQ4 463 aaPredicted RBP13.39□□□□□ -0.27
VPS52-213ENST00000461743 DDX39AO00148 427 aaKnown RBP13.39□□□□□ -0.27
VPS52-213ENST00000461743 BACH1O14867 736 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 SLC37A4O43826 429 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 DTNBO60941 627 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 ITGB8P26012 769 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 U2AF2P26368 475 aaKnown RBP eCLIP13.39□□□□□ -0.272e-14■■□□□ 11.8
VPS52-213ENST00000461743 STAT5BP51692 787 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 FOSBP53539 338 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 CHMP4BP1P59074 171 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 ADAM17P78536 824 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 PPFIA1Q13136 1202 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 GNL2Q13823 731 aaKnown RBP13.39□□□□□ -0.27
VPS52-213ENST00000461743 EARS2Q5JPH6 523 aaKnown RBP13.39□□□□□ -0.27
VPS52-213ENST00000461743 B3GNT9Q6UX72 402 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 SERINC5Q86VE9 423 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 CCDC60Q8IWA6 550 aaPredicted RBP13.39□□□□□ -0.27
VPS52-213ENST00000461743 CTAGE1Q96RT6 745 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 PCYT2Q99447 389 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 PPP1R12CQ9BZL4 782 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 ZNF302Q9NR11 478 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 TELO2Q9Y4R8 837 aa13.39□□□□□ -0.27
VPS52-213ENST00000461743 MBLAC1A4D2B0 266 aaPredicted RBP13.38□□□□□ -0.27
VPS52-213ENST00000461743 FAM205CA6NFA0 338 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 NEMFO60524 1076 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 BAG4O95429 457 aaKnown RBP13.38□□□□□ -0.27
VPS52-213ENST00000461743 CYP2C9P11712 490 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 PDCP20941 246 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 GUCY1B3Q02153 619 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 PPP2R5CQ13362 524 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 TAF2Q6P1X5 1199 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 RPAINQ86UA6 219 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 POTEDQ86YR6 584 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 RETREG2Q8NC44 543 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 ATP8B4Q8TF62 1192 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 LMBR1Q8WVP7 490 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 ATP6V0A1Q93050 837 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 WNT8AQ9H1J5 351 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 RNPEPQ9H4A4 650 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 DISC1Q9NRI5 854 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 NOL7Q9UMY1 257 aaKnown RBP13.38□□□□□ -0.27
VPS52-213ENST00000461743 TRPC6Q9Y210 931 aa13.38□□□□□ -0.27
VPS52-213ENST00000461743 MAFBQ9Y5Q3 323 aaPredicted RBP13.38□□□□□ -0.27
VPS52-213ENST00000461743 H3BQV1 296 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 HBP1O60381 514 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 SELPP16109 830 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 MARK3P27448 753 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 CYP2C18P33260 490 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 PLCB4Q15147 1175 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 GRIK4Q16099 956 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 TRIM71Q2Q1W2 868 aaKnown RBP13.37□□□□□ -0.27
VPS52-213ENST00000461743 PDXDC2PQ6P474 469 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 RPUSD2Q8IZ73 545 aaKnown RBP13.37□□□□□ -0.27
VPS52-213ENST00000461743 BBXQ8WY36 941 aaPredicted RBP13.37□□□□□ -0.27
VPS52-213ENST00000461743 DHX38Q92620 1227 aaKnown RBP13.37□□□□□ -0.27
VPS52-213ENST00000461743 UNC45AQ9H3U1 944 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 IL23AQ9NPF7 189 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 TUBE1Q9UJT0 475 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 VAV3Q9UKW4 847 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 CEP131Q9UPN4 1083 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 SAMM50Q9Y512 469 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 UMODL1Q5DID0 1318 aa13.37□□□□□ -0.27
VPS52-213ENST00000461743 POTEB3A0JP26 581 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 DKC1O60832 514 aaKnown RBP eCLIP13.36□□□□□ -0.27
VPS52-213ENST00000461743 CALCRLQ16602 461 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 HABP4Q5JVS0 413 aaKnown RBP13.36□□□□□ -0.27
VPS52-213ENST00000461743 POTEBQ6S5H4 581 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 LRRC8DQ7L1W4 858 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 MIER3Q7Z3K6 550 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 HSCBQ8IWL3 235 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 HAS1Q92839 578 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 MTIF3Q9H2K0 278 aaKnown RBP13.36□□□□□ -0.27
VPS52-213ENST00000461743 SETD4Q9NVD3 440 aa13.36□□□□□ -0.27
VPS52-213ENST00000461743 TREHO43280 583 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 CHMP2AO43633 222 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 MARCH6O60337 910 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 IQCF3P0C7M6 154 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 CKBP12277 381 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 INSRRP14616 1297 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 CSF2RAP15509 400 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms