RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 LMBR1Q8WVP7 490 aa19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 SLC9A7Q96T83 725 aa19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 ZMYND12Q9H0C1 365 aa19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 C6orf50Q9HD87 102 aa19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 JPH1Q9HDC5 661 aaPredicted RBP19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 FOXD4L1Q9NU39 408 aa19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 SLC9A2Q9UBY0 812 aa19.36■□□□□ 0.69
PRPF40A-204ENST00000450303 DDX39AO00148 427 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 MEIS1O00470 390 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 BAIAP3O94812 1187 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 PARNO95453 639 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 GNAT1P11488 350 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 XBP1P17861 261 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 GJB2P29033 226 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 WDR5P61964 334 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 DEFB103AP81534 67 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 ITGB3BPQ13352 177 aaPredicted RBP19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 NBR1Q14596 966 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 HERC6Q8IVU3 1022 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 SPRYD3Q8NCJ5 442 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 PHOSPHO2Q8TCD6 241 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 RASGRP4Q8TDF6 673 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 PCYT2Q99447 389 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 SDF4Q9BRK5 362 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 OSBPL7Q9BZF2 842 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 AGO4Q9HCK5 861 aaKnown RBP19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 VPS54Q9P1Q0 977 aa19.35■□□□□ 0.69
PRPF40A-204ENST00000450303 ESYT2A0FGR8 921 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 FAM86B1E9PN63 330 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 JAK2O60674 1132 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 CA3P07451 260 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 FAM86B2P0C5J1 330 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 ADAM17P78536 824 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 PLA2G4DQ86XP0 818 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 TEX2Q8IWB9 1127 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 CCDC12Q8WUD4 166 aaPredicted RBP19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 PPM1EQ8WY54 764 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 GAS2L1Q99501 681 aaPredicted RBP19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 SMARCAD1Q9H4L7 1026 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 CERS4Q9HA82 394 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 ERAP1Q9NZ08 941 aa19.34■□□□□ 0.69
PRPF40A-204ENST00000450303 NFASCO94856 1347 aa19.33■□□□□ 0.69
PRPF40A-204ENST00000450303 NRCAMQ92823 1304 aa19.33■□□□□ 0.69
PRPF40A-204ENST00000450303 LGR5O75473 907 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 ARHGEF15O94989 841 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 PDIA4P13667 645 aaKnown RBP19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 PDCP20941 246 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 IGFBP4P22692 258 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 ACTR2P61160 394 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 IGBP1P78318 339 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 PPFIA1Q13136 1202 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 TRIM29Q14134 588 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 IKBKEQ14164 716 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 ADGRE1Q14246 886 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 RUFY4Q6ZNE9 571 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 REXO1Q8N1G1 1221 aaKnown RBP19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 DBF4BQ8NFT6 615 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 ZBTB10Q96DT7 871 aa19.33■□□□□ 0.68
PRPF40A-204ENST00000450303 CHD9Q3L8U1 2897 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 ABHD14A-ACY1A0A1B0GW23 586 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 DTNBO60941 627 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 GNA11P29992 359 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 GRIK4Q16099 956 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 FAM117BQ6P1L5 589 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 CRYGNQ8WXF5 182 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 ZBED2Q9BTP6 218 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 AZI2Q9H6S1 392 aa19.32■□□□□ 0.68
PRPF40A-204ENST00000450303 CDH23Q9H251 3354 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 IGLV3-22A0A075B6J6 115 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 KIF28PB7ZC32 967 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 RFXAPO00287 272 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 TLL1O43897 1013 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 CYP3A4P08684 503 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 NLRP5P59047 1200 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.31■□□□□ 0.683e-21■■■■■ 31.7
PRPF40A-204ENST00000450303 FAM177A1Q8N128 213 aaPredicted RBP19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 USP38Q8NB14 1042 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 CCDC148Q8NFR7 591 aa19.31■□□□□ 0.68
PRPF40A-204ENST00000450303 EMSYQ7Z589 1322 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 CCNE2O96020 404 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 FDPSP14324 419 aaKnown RBP19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 INSRRP14616 1297 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 STAT5BP51692 787 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 CCDC85BQ15834 202 aaPredicted RBP19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 MARCH8Q5T0T0 291 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 LARP1BQ659C4 914 aaKnown RBP19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 NIPA1Q7RTP0 329 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 SPRED2Q7Z698 418 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 AIFM3Q96NN9 605 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 SH3GLB2Q9NR46 395 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 TUBE1Q9UJT0 475 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 TRPC6Q9Y210 931 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 MICAL3Q7RTP6 2002 aa19.3■□□□□ 0.68
PRPF40A-204ENST00000450303 LCHNA4D1U4 455 aa19.29■□□□□ 0.68
PRPF40A-204ENST00000450303 DLL1O00548 723 aa19.29■□□□□ 0.68
PRPF40A-204ENST00000450303 DHX15O43143 795 aaKnown RBP19.29■□□□□ 0.68
PRPF40A-204ENST00000450303 TAP1Q03518 808 aa19.29■□□□□ 0.68
PRPF40A-204ENST00000450303 PLCB4Q15147 1175 aa19.29■□□□□ 0.68
PRPF40A-204ENST00000450303 PLEKHG4Q58EX7 1191 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms