RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 DCAF15Q66K64 600 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 LCORLQ8N3X6 602 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 TRIML2Q8N7C3 387 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 RNF169Q8NCN4 708 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 SEPT9Q9UHD8 586 aaPredicted RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 INTUQ9ULD6 942 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 SNX24Q9Y343 169 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 ANGPTL3Q9Y5C1 460 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 SYNGAP1Q96PV0 1343 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 CFLARO15519 480 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 MED7O43513 233 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SPAG7O75391 227 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 PALMO75781 387 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 KRT37O76014 449 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 TMTC4Q5T4D3 741 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SPOPLQ6IQ16 392 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 WDR75Q8IWA0 830 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 ZNF579Q8NAF0 562 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 PAGR1Q9BTK6 254 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 GINM1Q9NU53 330 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 NUB1Q9Y5A7 615 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 GMNCA6NCL1 334 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 MEIS1O00470 390 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 GYG2O15488 501 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SORBS3O60504 671 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 ABL1P00519 1130 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 NR1H3Q13133 447 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 TMED1Q13445 227 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 IQCB1Q15051 598 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 CRLF3Q8IUI8 442 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 DNAJC17Q9NVM6 304 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 MORC2Q9Y6X9 1032 aaPredicted RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 IGSF1Q8N6C5 1336 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SRGAP2O75044 1071 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SASH1O94885 1247 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 NT5C2P49902 561 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 IFRD2Q12894 506 aaPredicted RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 PI16Q6UXB8 463 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 ZC3H18Q86VM9 953 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 KCTD6Q8NC69 237 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 COA7Q96BR5 231 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 NUDCD1Q96RS6 583 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 CYTH2Q99418 400 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 KANSL2Q9H9L4 492 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SLC38A10Q9HBR0 1119 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 G3BP2Q9UN86 482 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 LEMD3Q9Y2U8 911 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 CSADQ9Y600 493 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 ALCAMQ13740 583 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 CCDC144BQ3MJ40 725 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 C4orf50Q6ZRC1 276 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SESTD1Q86VW0 696 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 MYLK4Q86YV6 388 aaPredicted RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 FMR1NBQ8N0W7 255 aaPredicted RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 FGD4Q96M96 766 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 EIF2AQ9BY44 585 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 TMEM60Q9H2L4 133 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 ZNF408Q9H9D4 720 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 ANLNQ9NQW6 1124 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 SLC5A4Q9NY91 659 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 CEP72Q9P209 647 aa8.37□□□□□ -1.07
NEDD9-204ENST00000448183 PPARGC1AQ9UBK2 798 aaKnown RBP8.37□□□□□ -1.07
NEDD9-204ENST00000448183 A0A0G2JND7 137 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 PALM3A6NDB9 673 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 TCP10L2B9ZVM9 353 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 H0Y3Z8 333 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 EEF1DP29692 281 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 UBXN2AP68543 259 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 BIRC2Q13490 618 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 THOC5Q13769 683 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 UNC13DQ70J99 1090 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 SKA2Q8WVK7 121 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 CEP170P1Q96L14 293 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 MXD3Q9BW11 206 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 SPC25Q9HBM1 224 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 ZCCHC17Q9NP64 241 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 SERPINB13Q9UIV8 391 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 ADGRG1Q9Y653 693 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 RASA4BC9J798 803 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 INO80B-WBP1J3KQ70 363 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 RASA4O43374 803 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 PRPSAP2O60256 369 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 ZBED1O96006 694 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 MAGOHP61326 146 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 TMPRSS15P98073 1019 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 MDM2Q00987 491 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 NAA30Q147X3 362 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 FAM47EQ6ZV65 393 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 KCTD1Q719H9 257 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 INO80BQ9C086 356 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 KRT82Q9NSB4 513 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 PPME1Q9Y570 386 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 XDHP47989 1333 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 PPP2R2AP63151 447 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 TFAMQ00059 246 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 TOB2Q14106 344 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 RSRC2Q7L4I2 434 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 YY1AP1Q9H869 796 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 SAYSD1Q9NPB0 183 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 MLH3Q9UHC1 1453 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms