RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ATP6V0A1Q93050 837 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 DYDC2Q96IM9 177 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 HSD17B14Q9BPX1 270 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 TSEN34Q9BSV6 310 aaKnown RBP17.71■□□□□ 0.43
USP40-206ENST00000443711 POLR3CQ9BUI4 534 aaPredicted RBP17.71■□□□□ 0.43
USP40-206ENST00000443711 CRISPLD2Q9H0B8 497 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 SMARCAD1Q9H4L7 1026 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 TUFT1Q9NNX1 390 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 GABBR1Q9UBS5 961 aa17.71■□□□□ 0.43
USP40-206ENST00000443711 EMSYQ7Z589 1322 aa17.71■□□□□ 0.42
USP40-206ENST00000443711 PP2D1A8MPX8 630 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 LGALS2P05162 132 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 MUTP22033 750 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 RPA1P27694 616 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 CDC25AP30304 524 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 TXLNAP40222 546 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 QARSP47897 775 aaKnown RBP17.7■□□□□ 0.42
USP40-206ENST00000443711 PSMC5P62195 406 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 KCNA10Q16322 511 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 SPECC1Q5M775 1068 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 CCSAPQ6IQ19 270 aaPredicted RBP17.7■□□□□ 0.42
USP40-206ENST00000443711 CABP7Q86V35 215 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 CCDC60Q8IWA6 550 aaPredicted RBP17.7■□□□□ 0.42
USP40-206ENST00000443711 TMEM87AQ8NBN3 555 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 AFAP1L1Q8TED9 768 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 U2AF1L4Q8WU68 220 aaKnown RBP17.7■□□□□ 0.42
USP40-206ENST00000443711 PCYT2Q99447 389 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 CCSER1Q9C0I3 900 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 RGL1Q9NZL6 768 aa17.7■□□□□ 0.42
USP40-206ENST00000443711 MAFBQ9Y5Q3 323 aaPredicted RBP17.7■□□□□ 0.42
USP40-206ENST00000443711 HTTP42858 3142 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 A0A1W2PQ27 194 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 A0A1W2PQ64 194 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 A0A1W2PQD8 194 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 KBTBD13C9JR72 458 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 GOLGA6L22H0YM25 854 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 SLITRK3O94933 977 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 SPATA31C1P0DKV0 1188 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 CMA1P23946 247 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 GJA8P48165 433 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 SLC26A2P50443 739 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 CYP4A11Q02928 519 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 CTTNQ14247 550 aaKnown RBP17.69■□□□□ 0.42
USP40-206ENST00000443711 COL13A1Q5TAT6 717 aaPredicted RBP17.69■□□□□ 0.42
USP40-206ENST00000443711 PDXDC2PQ6P474 469 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 SHC4Q6S5L8 630 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 USP49Q70CQ1 688 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 CATSPER3Q86XQ3 398 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 TPH2Q8IWU9 490 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 BANK1Q8NDB2 785 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 SYMPKQ92797 1274 aaKnown RBP17.69■□□□□ 0.42
USP40-206ENST00000443711 CALML4Q96GE6 196 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 EPSTI1Q96J88 318 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 C16orf70Q9BSU1 422 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 MTG1Q9BT17 334 aaPredicted RBP17.69■□□□□ 0.42
USP40-206ENST00000443711 MMTAG2Q9BU76 263 aaKnown RBP17.69■□□□□ 0.42
USP40-206ENST00000443711 ZSWIM4Q9H7M6 989 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 FAM13BQ9NYF5 915 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 CCDC39Q9UFE4 941 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 ZNF215Q9UL58 517 aaPredicted RBP17.69■□□□□ 0.42
USP40-206ENST00000443711 KDM3AQ9Y4C1 1321 aa17.69■□□□□ 0.42
USP40-206ENST00000443711 KIAA0100Q14667 2235 aaKnown RBP17.68■□□□□ 0.42
USP40-206ENST00000443711 MOXD2PA6NHM9 499 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 H3BRB1 525 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 PRPF40AO75400 957 aaKnown RBP17.68■□□□□ 0.42
USP40-206ENST00000443711 MED24O75448 989 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 CABYRO75952 493 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 ASGR1P07306 291 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 ZNF286BP0CG31 522 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 ACLYP53396 1101 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 PURAQ00577 322 aaKnown RBP17.68■□□□□ 0.42
USP40-206ENST00000443711 RESP18Q5W5W9 173 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 RASSF8Q8NHQ8 419 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 CDK5RAP3Q96JB5 506 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 LXNQ9BS40 222 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 NT5C3AQ9H0P0 336 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 TUT1Q9H6E5 874 aaKnown RBP17.68■□□□□ 0.42
USP40-206ENST00000443711 ERAP1Q9NZ08 941 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 IGSF9BQ9UPX0 1349 aa17.68■□□□□ 0.42
USP40-206ENST00000443711 KAT6AQ92794 2004 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 DNM1LO00429 736 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 LYPLA2O95372 231 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 ZRSR1Q15695 479 aaKnown RBP17.67■□□□□ 0.42
USP40-206ENST00000443711 UGCGQ16739 394 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 TPRNQ4KMQ1 711 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 HYIQ5T013 277 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 CXCL17Q6UXB2 119 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 TRIM50Q86XT4 487 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 C4orf19Q8IY42 314 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 CKAP2LQ8IYA6 745 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 KCTD17Q8N5Z5 321 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 FAM167AQ96KS9 214 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 KATNAL1Q9BW62 490 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 NRBP2Q9NSY0 501 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 PHF24Q9UPV7 400 aa17.67■□□□□ 0.42
USP40-206ENST00000443711 POTEB3A0JP26 581 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 ZNF862O60290 1169 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 F2P00734 622 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 XRCC6P12956 609 aaKnown RBP eCLIP17.66■□□□□ 0.42
USP40-206ENST00000443711 ATP4AP20648 1035 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms