RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 KCNQ2O43526 872 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 OPA1O60313 960 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 PDE8AO60658 829 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 EVA1CP58658 441 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 KIAA2012Q0VF49 1180 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 PHF19Q5T6S3 580 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 TRMT10BQ6PF06 316 aaKnown RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 BORAQ6PGQ7 559 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 MAMDC2Q7Z304 686 aaPredicted RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 PRRT2Q7Z6L0 340 aaPredicted RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 STRA8Q7Z7C7 330 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 TXNDC5Q8NBS9 432 aaKnown RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 UHMK1Q8TAS1 419 aaKnown RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 CLEC4DQ8WXI8 215 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 MAGEB10Q96LZ2 347 aaPredicted RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 PUS7Q96PZ0 661 aaKnown RBP4.99□□□□□ -1.61
VPS41-207ENST00000439468 MTFR1LQ9H019 292 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 PCDH12Q9NPG4 1184 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 PLAAQ9Y263 795 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 COL4A3BPQ9Y5P4 624 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 DUSP10Q9Y6W6 482 aa4.99□□□□□ -1.61
VPS41-207ENST00000439468 MROH6A6NGR9 719 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 KPNA6O60684 536 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 EFCAB14O75071 495 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 JMJD7P0C870 316 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 KRT15P19012 456 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 POU3F3P20264 500 aaPredicted RBP4.98□□□□□ -1.61
VPS41-207ENST00000439468 ST5P78524 1137 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 PAK1Q13153 545 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 SKOR2Q2VWA4 1001 aaPredicted RBP4.98□□□□□ -1.61
VPS41-207ENST00000439468 PAN2Q504Q3 1202 aaKnown RBP4.98□□□□□ -1.61
VPS41-207ENST00000439468 FAM26FQ5R3K3 315 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 RNF180Q86T96 592 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 LCORQ96JN0 433 aaPredicted RBP4.98□□□□□ -1.61
VPS41-207ENST00000439468 CD244Q9BZW8 370 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 TMEM168Q9H0V1 697 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 CATSPERZQ9NTU4 200 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 FTSJ1Q9UET6 329 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 COQ6Q9Y2Z9 468 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 PRKAB1Q9Y478 270 aa4.98□□□□□ -1.61
VPS41-207ENST00000439468 ZNF536O15090 1300 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 K7ESM1 405 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 FBXO21O94952 628 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 ZNF28P17035 718 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 NCLP19338 710 aaKnown RBP4.97□□□□□ -1.61
VPS41-207ENST00000439468 CNGA1P29973 690 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 IL13P35225 146 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 GLRBP48167 497 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 NEK4P51957 841 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 SEPT7Q16181 437 aaKnown RBP4.97□□□□□ -1.61
VPS41-207ENST00000439468 ZFYVE27Q5T4F4 411 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 PIK3R6Q5UE93 754 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 CDCA2Q69YH5 1023 aaPredicted RBP4.97□□□□□ -1.61
VPS41-207ENST00000439468 KCTD1Q719H9 257 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 ZC3H7AQ8IWR0 971 aaKnown RBP4.97□□□□□ -1.61
VPS41-207ENST00000439468 LGI4Q8N135 537 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 TTLL11Q8NHH1 800 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 PCDH19Q8TAB3 1148 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 LEO1Q8WVC0 666 aaPredicted RBP4.97□□□□□ -1.61
VPS41-207ENST00000439468 FBXW5Q969U6 566 aa4.97□□□□□ -1.61
VPS41-207ENST00000439468 MAGEC2Q9UBF1 373 aaPredicted RBP4.97□□□□□ -1.61
VPS41-207ENST00000439468 ASLP04424 464 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 CKMP06732 381 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 VIL1P09327 827 aaKnown RBP4.96□□□□□ -1.62
VPS41-207ENST00000439468 PYGMP11217 842 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 FAHP16930 419 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 NAT1P18440 290 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 IGFALSP35858 605 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 STAT3P40763 770 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 DNM2P50570 870 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 MLLT6P55198 1093 aaPredicted RBP4.96□□□□□ -1.62
VPS41-207ENST00000439468 FAM47CQ5HY64 1035 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 PRR31Q5SQ13 230 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 PKN3Q6P5Z2 889 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 KRT26Q7Z3Y9 468 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 NXPE1Q8N323 547 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 IGSF22Q8N9C0 903 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 ZCCHC14Q8WYQ9 949 aaKnown RBP4.96□□□□□ -1.62
VPS41-207ENST00000439468 DLL4Q9NR61 685 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 RIC8BQ9NVN3 520 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 INVSQ9Y283 1065 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 TELO2Q9Y4R8 837 aa4.96□□□□□ -1.62
VPS41-207ENST00000439468 hCG_2014768A0A024R1R8 64 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 ARVCFO00192 962 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 KCNK3O14649 394 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 GLRX3O76003 335 aaKnown RBP4.95□□□□□ -1.62
VPS41-207ENST00000439468 GPR19Q15760 415 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 CRY1Q16526 586 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 SKIDA1Q1XH10 827 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 CFAP100Q494V2 611 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 BTBD8Q5XKL5 378 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 CD276Q5ZPR3 534 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 ZCCHC8Q6NZY4 707 aaKnown RBP4.95□□□□□ -1.62
VPS41-207ENST00000439468 ARHGAP36Q6ZRI8 547 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 LHFPL2Q6ZUX7 228 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 PTRH1Q86Y79 214 aaKnown RBP4.95□□□□□ -1.62
VPS41-207ENST00000439468 RPUSD2Q8IZ73 545 aaKnown RBP4.95□□□□□ -1.62
VPS41-207ENST00000439468 NLGN4XQ8N0W4 816 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 CHAC2Q8WUX2 184 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms