RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 USP26Q9BXU7 913 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 TUT1Q9H6E5 874 aaKnown RBP8.94□□□□□ -0.98
VPS50-204ENST00000438395 RIOX1Q9H6W3 641 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 SUPT16HQ9Y5B9 1047 aaKnown RBP8.94□□□□□ -0.98
VPS50-204ENST00000438395 MTCH2Q9Y6C9 303 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 PRRC2BQ5JSZ5 2229 aaKnown RBP8.93□□□□□ -0.98
VPS50-204ENST00000438395 HAS3O00219 553 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 SGSM2O43147 1006 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 NBNO60934 754 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 CAND2O75155 1236 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 GJB5O95377 273 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 LGALS2P05162 132 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 CTSHP09668 335 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 SMIM10L2AP0DMW4 78 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 SMIM10L2BP0DMW5 78 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 TFF2Q03403 129 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 PTH1RQ03431 593 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 TROAPQ12815 778 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 GRB10Q13322 594 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 UTP14CQ5TAP6 766 aaKnown RBP8.93□□□□□ -0.98
VPS50-204ENST00000438395 XRRA1Q6P2D8 792 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 METTL7BQ6UX53 244 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 NLRX1Q86UT6 975 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 SERINC5Q86VE9 423 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 ZNF654Q8IZM8 581 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 TMTC2Q8N394 836 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 KRI1Q8N9T8 703 aaKnown RBP8.93□□□□□ -0.98
VPS50-204ENST00000438395 GIMAP8Q8ND71 665 aaPredicted RBP8.93□□□□□ -0.98
VPS50-204ENST00000438395 GDPD5Q8WTR4 605 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 SEPT8Q92599 483 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 CDHR1Q96JP9 859 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 CTAGE1Q96RT6 745 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 YME1L1Q96TA2 773 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 SPZ1Q9BXG8 430 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 IL25Q9H293 177 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 EHMT1Q9H9B1 1298 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 RBM8AQ9Y5S9 174 aaKnown RBP8.93□□□□□ -0.98
VPS50-204ENST00000438395 TRANK1O15050 2925 aa8.93□□□□□ -0.98
VPS50-204ENST00000438395 TANC1Q9C0D5 1861 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 LCHNA4D1U4 455 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 EPOPA6NHQ4 379 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 SPDYE3A6NKU9 549 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 PRC1O43663 620 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 CALM1P0DP23 149 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 CALM2P0DP24 149 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 CALM3P0DP25 149 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 POU3F3P20264 500 aaPredicted RBP8.92□□□□□ -0.98
VPS50-204ENST00000438395 MCM5P33992 734 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 ARHGAP4P98171 946 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 ZNF200P98182 395 aaPredicted RBP8.92□□□□□ -0.98
VPS50-204ENST00000438395 KRT40Q6A162 431 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 SYNE3Q6ZMZ3 975 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 CYFIP1Q7L576 1253 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 TMCO2Q7Z6W1 182 aaPredicted RBP8.92□□□□□ -0.98
VPS50-204ENST00000438395 RSPH3Q86UC2 560 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 INPP4AQ96PE3 977 aaPredicted RBP8.92□□□□□ -0.98
VPS50-204ENST00000438395 MAP3K14Q99558 947 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 MYL10Q9BUA6 226 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 C1QTNF1Q9BXJ1 281 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 RTEL1Q9NZ71 1219 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 INSL6Q9Y581 213 aa8.92□□□□□ -0.98
VPS50-204ENST00000438395 SPTBN5Q9NRC6 3674 aaKnown RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 FRMPD4Q14CM0 1322 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 LINC01553A4QN01 128 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 SPATA31C2B4DYI2 1134 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 NRG2O14511 850 aaPredicted RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 CYTH3O43739 400 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 ARHGEF15O94989 841 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 ICAM3P32942 547 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 KCNQ1P51787 676 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 IRX6P78412 446 aaPredicted RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 SP2Q02086 613 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 GUCA2AQ02747 115 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 PTPROQ16827 1216 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 TRIM71Q2Q1W2 868 aaKnown RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 RNF20Q5VTR2 975 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 PCNX4Q63HM2 1172 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 BRICD5Q6PL45 260 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 USP17L6PQ6QN14 398 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 TRIM50Q86XT4 487 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 MB21D2Q8IYB1 491 aaPredicted RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 DBF4BQ8NFT6 615 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 GLG1Q92896 1179 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 GPKOWQ92917 476 aaPredicted RBP eCLIP8.91□□□□□ -0.98
VPS50-204ENST00000438395 TMEM87BQ96K49 555 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 SAMD11Q96NU1 681 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 NECAB3Q96P71 396 aaPredicted RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 C16orf70Q9BSU1 422 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 MTA3Q9BTC8 594 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 IFIH1Q9BYX4 1025 aaKnown RBP8.91□□□□□ -0.98
VPS50-204ENST00000438395 PSTPIP2Q9H939 334 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 SENP2Q9HC62 589 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 LMCD1Q9NZU5 365 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 SLC12A7Q9Y666 1083 aa8.91□□□□□ -0.98
VPS50-204ENST00000438395 NRCAMQ92823 1304 aa8.9□□□□□ -0.98
VPS50-204ENST00000438395 PIK3CDO00329 1044 aa8.9□□□□□ -0.98
VPS50-204ENST00000438395 TREHO43280 583 aa8.9□□□□□ -0.98
VPS50-204ENST00000438395 BMP1P13497 986 aa8.9□□□□□ -0.98
VPS50-204ENST00000438395 SMARCA1P28370 1054 aa8.9□□□□□ -0.98
VPS50-204ENST00000438395 ANTXR2P58335 489 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms