RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 LBHD1Q9BQE6 289 aaPredicted RBP26.04■■□□□ 1.76
SMARCB1-205ENST00000417137 RNPEPQ9H4A4 650 aa26.04■■□□□ 1.76
SMARCB1-205ENST00000417137 COLQQ9Y215 455 aaPredicted RBP26.04■■□□□ 1.76
SMARCB1-205ENST00000417137 TRIM43BA6NCK2 446 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 CHMP2AO43633 222 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 SYT1P21579 422 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 MARK3P27448 753 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 ZNF174Q15697 407 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 GDF6Q6KF10 455 aaPredicted RBP26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 PDXDC2PQ6P474 469 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 SH3RF1Q7Z6J0 888 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 TRIM43Q96BQ3 446 aaPredicted RBP26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 TBX21Q9UL17 535 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 PCDHA12Q9UN75 941 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 NRCAMQ92823 1304 aa26.03■■□□□ 1.76
SMARCB1-205ENST00000417137 PPP2R5CQ13362 524 aa26.02■■□□□ 1.76
SMARCB1-205ENST00000417137 BECN1Q14457 450 aa26.02■■□□□ 1.76
SMARCB1-205ENST00000417137 BRAPQ7Z569 592 aa26.02■■□□□ 1.76
SMARCB1-205ENST00000417137 WNT7AO00755 349 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 TIMP1P01033 207 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 B3GNT9Q6UX72 402 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 CCDC60Q8IWA6 550 aaPredicted RBP26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 CKAP2LQ8IYA6 745 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 CCDC155Q8N6L0 562 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 ALPK3Q96L96 1907 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 MTMR9Q96QG7 549 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 HIPK3Q9H422 1215 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 DOCK5Q9H7D0 1870 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 GABBR1Q9UBS5 961 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 TRPC6Q9Y210 931 aa26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 MAFBQ9Y5Q3 323 aaPredicted RBP26.01■■□□□ 1.75
SMARCB1-205ENST00000417137 POTEB3A0JP26 581 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 RRN3P2A6NIE6 340 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 TXKP42681 527 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 PPFIA1Q13136 1202 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 PLCB4Q15147 1175 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 POTEBQ6S5H4 581 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 ATP6V0A1Q93050 837 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 TTC12Q9H892 705 aaPredicted RBP26■■□□□ 1.75
SMARCB1-205ENST00000417137 SETD4Q9NVD3 440 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 VAV3Q9UKW4 847 aa26■■□□□ 1.75
SMARCB1-205ENST00000417137 HBP1O60381 514 aa25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 CYP2C9P11712 490 aa25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 HOXC8P31273 242 aa25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 TOB1P50616 345 aaPredicted RBP25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 PTK7Q13308 1070 aa25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 BFSP2Q13515 415 aa25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 FAM167AQ96KS9 214 aa25.99■■□□□ 1.75
SMARCB1-205ENST00000417137 STX6O43752 255 aa25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 DKC1O60832 514 aaKnown RBP eCLIP25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 OR52Z1P0C646 297 aa25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 RETREG2Q8NC44 543 aa25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 ATP8B4Q8TF62 1192 aa25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 BBXQ8WY36 941 aaPredicted RBP25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 NOC4LQ9BVI4 516 aaKnown RBP25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 TMEM60Q9H2L4 133 aa25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 NRBP2Q9NSY0 501 aa25.98■■□□□ 1.75
SMARCB1-205ENST00000417137 LAD1O00515 517 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 INSRRP14616 1297 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 ZNF200P98182 395 aaPredicted RBP25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 EPHA7Q15375 998 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 GRIK4Q16099 956 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 NCAPH2Q6IBW4 605 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 TMEM199Q8N511 208 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 CAGE1Q8TC20 777 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 LMBR1Q8WVP7 490 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 BADQ92934 168 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 PPP1R12CQ9BZL4 782 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 PCDHB6Q9Y5E3 794 aa25.97■■□□□ 1.75
SMARCB1-205ENST00000417137 EML1O00423 815 aa25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 MAGEA10P43363 369 aaPredicted RBP25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 MDM2Q00987 491 aaPredicted RBP25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 TMEM266Q2M3C6 531 aa25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 MFSD5Q6N075 450 aa25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 SPRYD3Q8NCJ5 442 aa25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 ZSCAN16Q9H4T2 348 aaPredicted RBP25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.96■■□□□ 1.75
SMARCB1-205ENST00000417137 IGSF9BQ9UPX0 1349 aa25.95■■□□□ 1.75
SMARCB1-205ENST00000417137 PITPNM1O00562 1244 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 TREHO43280 583 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 P4HBP07237 508 aaKnown RBP25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 PSMC5P62195 406 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 ADAM17P78536 824 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 PTGDRQ13258 359 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 HIC1Q14526 733 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 NBR1Q14596 966 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 ZNF484Q5JVG2 852 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 FERMT3Q86UX7 667 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 SERINC5Q86VE9 423 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 CTAGE1Q96RT6 745 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 CEP131Q9UPN4 1083 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 MTMR6Q9Y217 621 aa25.95■■□□□ 1.74
SMARCB1-205ENST00000417137 ATP4AP20648 1035 aa25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 ITGB8P26012 769 aa25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 CYP2C18P33260 490 aa25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 QARSP47897 775 aaKnown RBP25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 IGBP1P78318 339 aa25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 SPIRE1Q08AE8 756 aa25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 C4orf32Q8N8J7 132 aa25.94■■□□□ 1.74
SMARCB1-205ENST00000417137 GDF15Q99988 308 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms