RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 INVSQ9Y283 1065 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA9Q9Y5G4 932 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA8Q9Y5G5 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA7Q9Y5G6 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA6Q9Y5G7 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA3Q9Y5H0 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA2Q9Y5H1 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SLC12A7Q9Y666 1083 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 ANKRD26Q9UPS8 1709 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 FER1L6Q2WGJ9 1857 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CCDC7Q96M83 1385 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 TCRBV16S1A1N1A0A5B0 115 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 SLC26A4O43511 780 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 APOL3O95236 402 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 ALBP02768 609 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 IFNGR1P15260 489 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 KRT85P78386 507 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 RAPGEF1Q13905 1077 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 GTF2IRD2BQ6EKJ0 949 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 UBE2R2Q712K3 238 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 GTF2IRD2Q86UP8 949 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 PPIL6Q8IXY8 311 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 TTC30BQ8N4P2 665 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 GALNT11Q8NCW6 608 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 RIN2Q8WYP3 895 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 ERCC4Q92889 916 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 KLHL25Q9H0H3 589 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 EMC7Q9NPA0 242 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 CATSPERZQ9NTU4 200 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 KCNK4Q9NYG8 393 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 PPARGC1AQ9UBK2 798 aaKnown RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 LOC100289279A0A1B0GTE1 492 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 H0Y8X5 98 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 AGR2O95994 175 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 APPP05067 770 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 CD247P20963 164 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 ARL4DP49703 201 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 KCNQ4P56696 695 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 RBM10P98175 930 aaKnown RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 GRB10Q13322 594 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 CCDC157Q569K6 752 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 SAMD5Q5TGI4 173 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 TMC3Q7Z5M5 1100 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 WDR18Q9BV38 432 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 SLC13A1Q9BZW2 595 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 RCAN3Q9UKA8 241 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 MORC2Q9Y6X9 1032 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 M0R082 166 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 MSCO60682 206 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 ADAM11O75078 769 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 NEFMP07197 916 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 IGFALSP35858 605 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 SUMO1P63165 101 aaKnown RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 AUHQ13825 339 aaKnown RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 UBAP2LQ14157 1087 aaKnown RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 TOMM20Q15388 145 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 BROXQ5VW32 411 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 RNF219Q5W0B1 726 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 OTOP3Q7RTS5 596 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 CCDC84Q86UT8 332 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 LIX1LQ8IVB5 337 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 SIRT2Q8IXJ6 389 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 C19orf47Q8N9M1 422 aaKnown RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 CLRN3Q8NCR9 226 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 ZNF417Q8TAU3 575 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 ZNF587Q96SQ5 575 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 PAGR1Q9BTK6 254 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 GBP3Q9H0R5 595 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 SMC4Q9NTJ3 1288 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 KLHL11Q9NVR0 708 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 GGA1Q9UJY5 639 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 GPC6Q9Y625 555 aaPredicted RBP3.12□□□□□ -1.91
MCF2-204ENST00000414978 GPRASP1Q5JY77 1395 aa3.12□□□□□ -1.91
MCF2-204ENST00000414978 PTPDC1A2A3K4 754 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 FAM229AH3BQW9 127 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 H7C1W4 665 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 SLFN14P0C7P3 912 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 TMEM253P0C7T8 217 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 ITGA6P23229 1130 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 KPNA1P52294 538 aaPredicted RBP3.11□□□□□ -1.91
MCF2-204ENST00000414978 PMS1P54277 932 aaKnown RBP3.11□□□□□ -1.91
MCF2-204ENST00000414978 NTRK3Q16288 839 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 UAP1L1Q3KQV9 507 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 DENND5AQ6IQ26 1287 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 ZCCHC8Q6NZY4 707 aaKnown RBP3.11□□□□□ -1.91
MCF2-204ENST00000414978 CCDC174Q6PII3 467 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 CPNE8Q86YQ8 564 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.11□□□□□ -1.91
MCF2-204ENST00000414978 ZFPM1Q8IX07 1006 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 FRS2Q8WU20 508 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 KCTD13Q8WZ19 329 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 FUBP3Q96I24 572 aaKnown RBP eCLIP3.11□□□□□ -1.91
MCF2-204ENST00000414978 TNIP3Q96KP6 325 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 CCDC74BQ96LY2 380 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 ZHX3Q9H4I2 956 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 RETREG1Q9H6L5 497 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 ALG13Q9NP73 1137 aaKnown RBP3.11□□□□□ -1.91
MCF2-204ENST00000414978 TOPORSQ9NS56 1045 aaPredicted RBP3.11□□□□□ -1.91
MCF2-204ENST00000414978 CLEC1BQ9P126 229 aa3.11□□□□□ -1.91
MCF2-204ENST00000414978 GOLGA8AA7E2F4 631 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms