RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 EMILIN3Q9NT22 766 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 AKR1B15C9JRZ8 316 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-211ENST00000413186 IKBKBO14920 756 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 ZNF500O60304 480 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-211ENST00000413186 EYA4O95677 639 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 BCRP11274 1271 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 CCNE1P24864 410 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 STAT5BP51692 787 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 TRMT44Q8IYL2 757 aaKnown RBP9.35□□□□□ -0.91
SYNE1-211ENST00000413186 PIK3R5Q8WYR1 880 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 MRFAP1L1Q96HT8 127 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 P2RX7Q99572 595 aaKnown RBP9.35□□□□□ -0.91
SYNE1-211ENST00000413186 RANBP17Q9H2T7 1088 aaKnown RBP9.35□□□□□ -0.91
SYNE1-211ENST00000413186 SMARCAD1Q9H4L7 1026 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 SLC38A10Q9HBR0 1119 aa9.35□□□□□ -0.91
SYNE1-211ENST00000413186 IRF6O14896 467 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 PKN1Q16512 942 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 OR6J1Q8NGC5 347 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 PSPC1Q8WXF1 523 aaKnown RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 BBXQ8WY36 941 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 KATNAL1Q9BW62 490 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 TAB2Q9NYJ8 693 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 POTEB3A0JP26 581 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 POTECB2RU33 542 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 KCNJ18B7U540 433 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 K7ERI5 159 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 TNNC2P02585 160 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 SETSIPP0DME0 302 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 FXR2P51116 673 aaKnown RBP eCLIP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 LAMC2Q13753 1193 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 KCNJ12Q14500 433 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 SLFN12LQ6IEE8 588 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 POTEBQ6S5H4 581 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 FMR1NBQ8N0W7 255 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 BANK1Q8NDB2 785 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 ZNF384Q8TF68 577 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 DDX12PQ92771 950 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 C2orf40Q9H1Z8 148 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 FAM205CA6NFA0 338 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 EEF1GP26641 437 aaKnown RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 PTGER2P43116 358 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 SLC8A3P57103 927 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 CDC42EP1Q00587 391 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 LRRC63Q05C16 580 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 RAPGEF1Q13905 1077 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 PIGOQ8TEQ8 1089 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 FAM217BQ9NTX9 383 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 KCND2Q9NZV8 630 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 MKRN1Q9UHC7 482 aaKnown RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 MAN1B1Q9UKM7 699 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 PLIN4Q96Q06 1357 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 SPDYE4A6NLX3 237 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 KCNA3P22001 575 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 MARK3P27448 753 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 NOP2P46087 812 aaKnown RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 DEFB115Q30KQ5 88 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 NBPF11Q86T75 865 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 SYTL5Q8TDW5 730 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-211ENST00000413186 NLRP7Q8WX94 980 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 GJA10Q969M2 543 aa9.34□□□□□ -0.91
SYNE1-211ENST00000413186 PAFAH1B1P43034 410 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 SNX16P57768 344 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 SURF1Q15526 300 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 ZNF746Q6NUN9 644 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 MAF1Q9H063 256 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 KCNH7Q9NS40 1196 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 C4AP0C0L4 1744 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 MYH3P11055 1940 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 ZBTB48P10074 688 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 MUTP22033 750 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PTGS1P23219 599 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 NR2F2P24468 414 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 CDC25BP30305 580 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PSMC2P35998 433 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PHKA2P46019 1235 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 KMT5BQ4FZB7 885 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PCNX4Q63HM2 1172 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 RIOX2Q8IUF8 465 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 ENOX1Q8TC92 643 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 WNK4Q96J92 1243 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 MTRQ99707 1265 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PLVAPQ9BX97 442 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 TRMT1Q9NXH9 659 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 RWDD2AQ9UIY3 292 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 POTEFA5A3E0 1075 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 E9PMD0 336 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PRPF6O94906 941 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 POTEIP0CG38 1075 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 ATF7P17544 494 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 NOL9Q5SY16 702 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 POTEGQ6S5H5 508 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 SHC4Q6S5L8 630 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 POTEEQ6S8J3 1075 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 CYFIP1Q7L576 1253 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 C7orf31Q8N865 590 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 RDH13Q8NBN7 331 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 SOCS4Q8WXH5 440 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PDCD2LQ9BRP1 358 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 JADE2Q9NQC1 790 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 PRKAG2Q9UGJ0 569 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms