RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 BECN1Q14457 450 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 NBR1Q14596 966 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 GDF6Q6KF10 455 aaPredicted RBP22.89■■□□□ 1.25
PTCD3-202ENST00000409326 TRPV6Q9H1D0 765 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 TMEM60Q9H2L4 133 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 RNPEPQ9H4A4 650 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 PRDM5Q9NQX1 630 aaPredicted RBP22.89■■□□□ 1.25
PTCD3-202ENST00000409326 ZNF302Q9NR11 478 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 TBX21Q9UL17 535 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 ZMYND8Q9ULU4 1186 aaPredicted RBP22.89■■□□□ 1.25
PTCD3-202ENST00000409326 MTMR6Q9Y217 621 aa22.89■■□□□ 1.25
PTCD3-202ENST00000409326 IGSF9BQ9UPX0 1349 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 HOXC8P31273 242 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 SWSAP1Q6NVH7 229 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 MIER3Q7Z3K6 550 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 SH3RF1Q7Z6J0 888 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 TMEM39AQ9NV64 488 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 PRKAG2Q9UGJ0 569 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 PCDHB6Q9Y5E3 794 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 TANC1Q9C0D5 1861 aa22.88■■□□□ 1.25
PTCD3-202ENST00000409326 TRIM43BA6NCK2 446 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 H0YGN5 161 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 KIAA0355O15063 1070 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 SYN1P17600 705 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 SPIRE1Q08AE8 756 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 PDXDC2PQ6P474 469 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 FERMT3Q86UX7 667 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 SPRYD3Q8NCJ5 442 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 TRIM43Q96BQ3 446 aaPredicted RBP22.87■■□□□ 1.25
PTCD3-202ENST00000409326 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.87■■□□□ 1.25
PTCD3-202ENST00000409326 GABBR1Q9UBS5 961 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 PCDHA12Q9UN75 941 aa22.87■■□□□ 1.25
PTCD3-202ENST00000409326 MAFBQ9Y5Q3 323 aaPredicted RBP22.87■■□□□ 1.25
PTCD3-202ENST00000409326 C17orf102A2RUQ5 167 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 OR52Z1P0C646 297 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 PDIA4P13667 645 aaKnown RBP22.86■■□□□ 1.25
PTCD3-202ENST00000409326 RESTQ13127 1097 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 HIC1Q14526 733 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 PLCB4Q15147 1175 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 PTGISQ16647 500 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 CTAGE1Q96RT6 745 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 TTC12Q9H892 705 aaPredicted RBP22.86■■□□□ 1.25
PTCD3-202ENST00000409326 NOD1Q9Y239 953 aa22.86■■□□□ 1.25
PTCD3-202ENST00000409326 NRCAMQ92823 1304 aa22.85■■□□□ 1.25
PTCD3-202ENST00000409326 EML1O00423 815 aa22.85■■□□□ 1.25
PTCD3-202ENST00000409326 GNAT1P11488 350 aa22.85■■□□□ 1.25
PTCD3-202ENST00000409326 TXKP42681 527 aa22.85■■□□□ 1.25
PTCD3-202ENST00000409326 C4orf32Q8N8J7 132 aa22.85■■□□□ 1.25
PTCD3-202ENST00000409326 TNPO1Q92973 898 aaKnown RBP22.85■■□□□ 1.25
PTCD3-202ENST00000409326 TRPC6Q9Y210 931 aa22.85■■□□□ 1.25
PTCD3-202ENST00000409326 POTEB3A0JP26 581 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 ATP4AP20648 1035 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 PPFIA1Q13136 1202 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 POTEBQ6S5H4 581 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 ATP8B4Q8TF62 1192 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 LMBR1Q8WVP7 490 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 SETD4Q9NVD3 440 aa22.84■■□□□ 1.25
PTCD3-202ENST00000409326 EVPLQ92817 2033 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 LAD1O00515 517 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 CYP2C9P11712 490 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 ADAM17P78536 824 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 ZNF200P98182 395 aaPredicted RBP22.83■■□□□ 1.25
PTCD3-202ENST00000409326 PTGDRQ13258 359 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 EPHA7Q15375 998 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 GRIK4Q16099 956 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 UGCGQ16739 394 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 NCAPH2Q6IBW4 605 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 ATP6V0A1Q93050 837 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 HIPK3Q9H422 1215 aa22.83■■□□□ 1.25
PTCD3-202ENST00000409326 ZSCAN16Q9H4T2 348 aaPredicted RBP22.83■■□□□ 1.25
PTCD3-202ENST00000409326 ZNF862O60290 1169 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 HBP1O60381 514 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 TIMP1P01033 207 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 INSRRP14616 1297 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 RAG1P15918 1043 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 ITGB8P26012 769 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 PTK7Q13308 1070 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 PRPF38BQ5VTL8 546 aaKnown RBP22.82■■□□□ 1.24
PTCD3-202ENST00000409326 CKAP2LQ8IYA6 745 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 BBXQ8WY36 941 aaPredicted RBP22.82■■□□□ 1.24
PTCD3-202ENST00000409326 FAM167AQ96KS9 214 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 NOC4LQ9BVI4 516 aaKnown RBP22.82■■□□□ 1.24
PTCD3-202ENST00000409326 PCDH10Q9P2E7 1040 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 ARID2Q68CP9 1835 aa22.82■■□□□ 1.24
PTCD3-202ENST00000409326 COL1A2P08123 1366 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 RRN3P2A6NIE6 340 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 TREHO43280 583 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 P4HBP07237 508 aaKnown RBP22.81■■□□□ 1.24
PTCD3-202ENST00000409326 PSMC5P62195 406 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 ATP2C1P98194 919 aaPredicted RBP22.81■■□□□ 1.24
PTCD3-202ENST00000409326 PRKCEQ02156 737 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 SERINC5Q86VE9 423 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 BANK1Q8NDB2 785 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 PPP1R12CQ9BZL4 782 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 SCN5AQ14524 2016 aa22.81■■□□□ 1.24
PTCD3-202ENST00000409326 MBLAC1A4D2B0 266 aaPredicted RBP22.8■■□□□ 1.24
PTCD3-202ENST00000409326 POTEMA6NI47 508 aa22.8■■□□□ 1.24
PTCD3-202ENST00000409326 OATP04181 439 aa22.8■■□□□ 1.24
PTCD3-202ENST00000409326 PRPHP41219 470 aa22.8■■□□□ 1.24
PTCD3-202ENST00000409326 TECP42680 631 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms