RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 EIF5BO60841 1220 aaKnown RBP32.62■■■□□ 2.81
HMGB1-205ENST00000399494 FGD1P98174 961 aa32.62■■■□□ 2.81
HMGB1-205ENST00000399494 GRIK4Q16099 956 aa32.62■■■□□ 2.81
HMGB1-205ENST00000399494 TCEAL5Q5H9L2 206 aa32.62■■■□□ 2.81
HMGB1-205ENST00000399494 GJD3Q8N144 294 aa32.62■■■□□ 2.81
HMGB1-205ENST00000399494 FIBCD1Q8N539 461 aa32.62■■■□□ 2.81
HMGB1-205ENST00000399494 MARK3P27448 753 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 PSMA5P28066 241 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 EXOSC10Q01780 885 aaKnown RBP32.61■■■□□ 2.81
HMGB1-205ENST00000399494 COL19A1Q14993 1142 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 BLOC1S2Q6QNY1 142 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 RSPH3Q86UC2 560 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 CCDC82Q8N4S0 544 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 DNAJB3Q8WWF6 145 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 SMARCAD1Q9H4L7 1026 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 JADE2Q9NQC1 790 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 PCDHA6Q9UN73 950 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 ARIH1Q9Y4X5 557 aaPredicted RBP32.61■■■□□ 2.81
HMGB1-205ENST00000399494 PCDHA8Q9Y5H6 950 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 SLC12A7Q9Y666 1083 aa32.61■■■□□ 2.81
HMGB1-205ENST00000399494 LINC00271P0C7V0 271 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 MTMR1Q13613 665 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 PUS10Q3MIT2 529 aaKnown RBP32.6■■■□□ 2.81
HMGB1-205ENST00000399494 SYNE3Q6ZMZ3 975 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 RAB11FIP4Q86YS3 637 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 FANCBQ8NB91 859 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 GLG1Q92896 1179 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 PABPC5Q96DU9 382 aaKnown RBP32.6■■■□□ 2.81
HMGB1-205ENST00000399494 PKD2L1Q9P0L9 805 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 TUBE1Q9UJT0 475 aa32.6■■■□□ 2.81
HMGB1-205ENST00000399494 NLRC5Q86WI3 1866 aa32.59■■■□□ 2.81
HMGB1-205ENST00000399494 C5orf67F2Z3F1 127 aa32.59■■■□□ 2.81
HMGB1-205ENST00000399494 H3BQ06 376 aaPredicted RBP32.59■■■□□ 2.81
HMGB1-205ENST00000399494 BMPR1AP36894 532 aa32.59■■■□□ 2.81
HMGB1-205ENST00000399494 FBXO47Q5MNV8 452 aa32.59■■■□□ 2.81
HMGB1-205ENST00000399494 NSUN3Q9H649 340 aaKnown RBP32.59■■■□□ 2.81
HMGB1-205ENST00000399494 RC3H2Q9HBD1 1191 aaKnown RBP32.59■■■□□ 2.81
HMGB1-205ENST00000399494 SPDYE3A6NKU9 549 aa32.58■■■□□ 2.81
HMGB1-205ENST00000399494 RB1P06400 928 aa32.58■■■□□ 2.81
HMGB1-205ENST00000399494 TMTC3Q6ZXV5 915 aa32.58■■■□□ 2.81
HMGB1-205ENST00000399494 PCYT2Q99447 389 aa32.58■■■□□ 2.81
HMGB1-205ENST00000399494 FAM86C2PA6NEL3 165 aa32.57■■■□□ 2.8
HMGB1-205ENST00000399494 CPA1P15085 419 aa32.57■■■□□ 2.8
HMGB1-205ENST00000399494 SGMS1Q86VZ5 419 aa32.57■■■□□ 2.8
HMGB1-205ENST00000399494 ZNF689Q96CS4 500 aaPredicted RBP32.57■■■□□ 2.8
HMGB1-205ENST00000399494 CDY2AQ9Y6F7 541 aa32.57■■■□□ 2.8
HMGB1-205ENST00000399494 RALGAPA2Q2PPJ7 1873 aa32.57■■■□□ 2.8
HMGB1-205ENST00000399494 RRN3P2A6NIE6 340 aa32.56■■■□□ 2.8
HMGB1-205ENST00000399494 INSRRP14616 1297 aa32.56■■■□□ 2.8
HMGB1-205ENST00000399494 CTNNB1P35222 781 aa32.56■■■□□ 2.8
HMGB1-205ENST00000399494 CLP1Q92989 425 aaKnown RBP32.56■■■□□ 2.8
HMGB1-205ENST00000399494 HCN4Q9Y3Q4 1203 aa32.56■■■□□ 2.8
HMGB1-205ENST00000399494 IGBP1P78318 339 aa32.55■■■□□ 2.8
HMGB1-205ENST00000399494 TSHZ1Q6ZSZ6 1077 aa32.55■■■□□ 2.8
HMGB1-205ENST00000399494 MICU3Q86XE3 530 aa32.55■■■□□ 2.8
HMGB1-205ENST00000399494 ZBTB10Q96DT7 871 aa32.55■■■□□ 2.8
HMGB1-205ENST00000399494 AGO3Q9H9G7 860 aaKnown RBP32.55■■■□□ 2.8
HMGB1-205ENST00000399494 RWDD3Q9Y3V2 267 aa32.55■■■□□ 2.8
HMGB1-205ENST00000399494 ADGRA3Q8IWK6 1321 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 GRM6O15303 877 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 RPS6KB1P23443 525 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 SSTR3P32745 418 aaPredicted RBP32.54■■■□□ 2.8
HMGB1-205ENST00000399494 MRPS6P82932 125 aaKnown RBP32.54■■■□□ 2.8
HMGB1-205ENST00000399494 HEATR3Q7Z4Q2 680 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 MXRA8Q9BRK3 442 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 C11orf84Q9BUA3 381 aaPredicted RBP32.54■■■□□ 2.8
HMGB1-205ENST00000399494 LMAN2LQ9H0V9 348 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 KCNH7Q9NS40 1196 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 SLC9A2Q9UBY0 812 aa32.54■■■□□ 2.8
HMGB1-205ENST00000399494 NAP1L2Q9ULW6 460 aaPredicted RBP32.54■■■□□ 2.8
HMGB1-205ENST00000399494 EP400NLQ6ZTU2 488 aa32.53■■■□□ 2.8
HMGB1-205ENST00000399494 Q6ZUG5 572 aa32.53■■■□□ 2.8
HMGB1-205ENST00000399494 RTN4RL1Q86UN2 441 aaPredicted RBP32.53■■■□□ 2.8
HMGB1-205ENST00000399494 CYP2W1Q8TAV3 490 aa32.53■■■□□ 2.8
HMGB1-205ENST00000399494 JPH1Q9HDC5 661 aaPredicted RBP32.53■■■□□ 2.8
HMGB1-205ENST00000399494 NCK2O43639 380 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 DGKIO75912 1065 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 RPLP2P05387 115 aaKnown RBP32.52■■■□□ 2.8
HMGB1-205ENST00000399494 LTBRP36941 435 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 APOA5Q6Q788 366 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 CRIPAKQ8N1N5 446 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 CLDND1Q9NY35 253 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 SQORQ9Y6N5 450 aa32.52■■■□□ 2.8
HMGB1-205ENST00000399494 TTC3P53804 2025 aa32.51■■■□□ 2.8
HMGB1-205ENST00000399494 KLF18A0A0U1RQI7 1052 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 POTEB3A0JP26 581 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 CD52P31358 61 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 BTG3Q14201 252 aaPredicted RBP32.51■■■□□ 2.79
HMGB1-205ENST00000399494 CTC1Q2NKJ3 1217 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 IER5Q5VY09 327 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 WWC2Q6AWC2 1192 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 POTEBQ6S5H4 581 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 LINC01599Q8WXQ3 324 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 FAM49AQ9H0Q0 323 aaPredicted RBP32.51■■■□□ 2.79
HMGB1-205ENST00000399494 AZI2Q9H6S1 392 aa32.51■■■□□ 2.79
HMGB1-205ENST00000399494 ZBTB43O43298 467 aa32.5■■■□□ 2.79
HMGB1-205ENST00000399494 PLCB4Q15147 1175 aa32.5■■■□□ 2.79
HMGB1-205ENST00000399494 PLPPR4Q7Z2D5 763 aa32.5■■■□□ 2.79
HMGB1-205ENST00000399494 RIC8AQ9NPQ8 531 aa32.5■■■□□ 2.79
HMGB1-205ENST00000399494 BRPF3Q9ULD4 1205 aa32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms