RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 GHRP10912 638 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 CPA1P15085 419 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 KCNA5P22460 613 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 LIFRP42702 1097 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 MGAT3Q09327 533 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 TMTC3Q6ZXV5 915 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 PGBD1Q96JS3 809 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 TMEM87BQ96K49 555 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 TCEANC2Q96MN5 208 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 YME1L1Q96TA2 773 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 LZTS2Q9BRK4 669 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 IFIH1Q9BYX4 1025 aaKnown RBP11.82□□□□□ -0.52
NEDD8-202ENST00000396828 EHMT1Q9H9B1 1298 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 C11orf16Q9NQ32 467 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 PCDHA6Q9UN73 950 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 PCDHA8Q9Y5H6 950 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 UBIAD1Q9Y5Z9 338 aa11.82□□□□□ -0.52
NEDD8-202ENST00000396828 COL4A6Q14031 1691 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 H3BNC9 293 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 CAND2O75155 1236 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 IL9P15248 144 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 AK2P54819 239 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 EXOSC10Q01780 885 aaKnown RBP11.81□□□□□ -0.52
NEDD8-202ENST00000396828 PPFIA1Q13136 1202 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 LPIN1Q14693 890 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 GRIK4Q16099 956 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 XRRA1Q6P2D8 792 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 Q6ZUG5 572 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 NLRX1Q86UT6 975 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 TMEM192Q8IY95 271 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 FANCBQ8NB91 859 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 DNAJB3Q8WWF6 145 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 SEPT1Q8WYJ6 367 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 GPRASP2Q96D09 838 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 MRPL38Q96DV4 380 aaKnown RBP11.81□□□□□ -0.52
NEDD8-202ENST00000396828 MTA3Q9BTC8 594 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 LRFN3Q9BTN0 628 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 AGO3Q9H9G7 860 aaKnown RBP11.81□□□□□ -0.52
NEDD8-202ENST00000396828 ZNF215Q9UL58 517 aaPredicted RBP11.81□□□□□ -0.52
NEDD8-202ENST00000396828 BRPF3Q9ULD4 1205 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 NRCAMQ92823 1304 aa11.81□□□□□ -0.52
NEDD8-202ENST00000396828 LOXHD1Q8IVV2 1947 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 MBLAC1A4D2B0 266 aaPredicted RBP11.8□□□□□ -0.52
NEDD8-202ENST00000396828 FAM86C2PA6NEL3 165 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 H3BQ06 376 aaPredicted RBP11.8□□□□□ -0.52
NEDD8-202ENST00000396828 ENPP3O14638 875 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 ADAMTS3O15072 1205 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 HSP90AA1P07900 732 aaKnown RBP11.8□□□□□ -0.52
NEDD8-202ENST00000396828 ARP10275 920 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 GNAT1P11488 350 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 GNAQP50148 359 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 IGBP1P78318 339 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 GPM6BQ13491 265 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 MTMR1Q13613 665 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 LEXMQ3ZCV2 418 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 WWC2Q6AWC2 1192 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 HEATR3Q7Z4Q2 680 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 RPAINQ86UA6 219 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 RTN4RL1Q86UN2 441 aaPredicted RBP11.8□□□□□ -0.52
NEDD8-202ENST00000396828 MICU3Q86XE3 530 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 FBXL16Q8N461 479 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 TRAPPC12Q8WVT3 735 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 LINC01599Q8WXQ3 324 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 ZSCAN31Q96LW9 406 aaPredicted RBP11.8□□□□□ -0.52
NEDD8-202ENST00000396828 RC3H2Q9HBD1 1191 aaKnown RBP11.8□□□□□ -0.52
NEDD8-202ENST00000396828 JADE2Q9NQC1 790 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 LIMCH1Q9UPQ0 1083 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 SLC12A7Q9Y666 1083 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 CNTNAP5Q8WYK1 1306 aa11.8□□□□□ -0.52
NEDD8-202ENST00000396828 CD2BP2O95400 341 aaKnown RBP11.79□□□□□ -0.52
NEDD8-202ENST00000396828 INSRRP14616 1297 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 TMEM62Q0P6H9 643 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 FUT2Q10981 343 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 TCEAL5Q5H9L2 206 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 FBXO47Q5MNV8 452 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 SGMS1Q86VZ5 419 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 TMTC2Q8N394 836 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 GIMAP8Q8ND71 665 aaPredicted RBP11.79□□□□□ -0.52
NEDD8-202ENST00000396828 BANK1Q8NDB2 785 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 NEK9Q8TD19 979 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 GLG1Q92896 1179 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 C1QTNF1Q9BXJ1 281 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 KCNH7Q9NS40 1196 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 TMEM260Q9NX78 707 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 ERAP1Q9NZ08 941 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 TUBE1Q9UJT0 475 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 CDY2AQ9Y6F7 541 aa11.79□□□□□ -0.52
NEDD8-202ENST00000396828 RALGAPA2Q2PPJ7 1873 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 TTC3P53804 2025 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 GRXCR2A6NFK2 248 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 SPDYE3A6NKU9 549 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 GRM6O15303 877 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CSPG5O95196 566 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CALM1P0DP23 149 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CALM2P0DP24 149 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CALM3P0DP25 149 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CD52P31358 61 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 ITGB3BPQ13352 177 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-202ENST00000396828 TOB2Q14106 344 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-202ENST00000396828 PTCRAQ6ISU1 281 aaPredicted RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms