RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PSAPP07602 524 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 U2AF2P26368 475 aaKnown RBP eCLIP24.52■■□□□ 1.52
CLN3-207ENST00000395653 MARK3P27448 753 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 JAK3P52333 1124 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 FPGSQ05932 587 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 PTK7Q13308 1070 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 BFSP2Q13515 415 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 B3GNT9Q6UX72 402 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 POTEDQ86YR6 584 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 TMEM199Q8N511 208 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 CCDC155Q8N6L0 562 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 RDM1Q8NG50 284 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 TNPO1Q92973 898 aaKnown RBP24.52■■□□□ 1.52
CLN3-207ENST00000395653 UNC45AQ9H3U1 944 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 DISC1Q9NRI5 854 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 SETD4Q9NVD3 440 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 UMODL1Q5DID0 1318 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 KIF28PB7ZC32 967 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 ZNF200P98182 395 aaPredicted RBP24.52■■□□□ 1.52
CLN3-207ENST00000395653 RBL2Q08999 1139 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 PLCB4Q15147 1175 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 LMBR1Q8WVP7 490 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 ATP6V0A1Q93050 837 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 INTS4Q96HW7 963 aaKnown RBP24.52■■□□□ 1.52
CLN3-207ENST00000395653 WNT8AQ9H1J5 351 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 SAMM50Q9Y512 469 aa24.52■■□□□ 1.52
CLN3-207ENST00000395653 CHMP2AO43633 222 aa24.51■■□□□ 1.51
CLN3-207ENST00000395653 ADAM17P78536 824 aa24.51■■□□□ 1.51
CLN3-207ENST00000395653 PPFIA1Q13136 1202 aa24.51■■□□□ 1.51
CLN3-207ENST00000395653 PPIGQ13427 754 aaKnown RBP eCLIP24.51■■□□□ 1.516e-7■■□□□ 11.8
CLN3-207ENST00000395653 SWSAP1Q6NVH7 229 aa24.51■■□□□ 1.51
CLN3-207ENST00000395653 SERINC5Q86VE9 423 aa24.51■■□□□ 1.51
CLN3-207ENST00000395653 HAS1Q92839 578 aa24.51■■□□□ 1.51
CLN3-207ENST00000395653 MAFBQ9Y5Q3 323 aaPredicted RBP24.51■■□□□ 1.51
CLN3-207ENST00000395653 H3BQV1 296 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 WNT7AO00755 349 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 TREHO43280 583 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 BAG4O95429 457 aaKnown RBP24.5■■□□□ 1.51
CLN3-207ENST00000395653 TRAPPC10P48553 1259 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 ORC2Q13416 577 aaPredicted RBP24.5■■□□□ 1.51
CLN3-207ENST00000395653 PDXDC2PQ6P474 469 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 SLFN12Q8IYM2 578 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 DHX38Q92620 1227 aaKnown RBP24.5■■□□□ 1.51
CLN3-207ENST00000395653 TRPC6Q9Y210 931 aa24.5■■□□□ 1.51
CLN3-207ENST00000395653 IGSF9BQ9UPX0 1349 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 MARCH6O60337 910 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 CSF2RAP15509 400 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 PPP2R5CQ13362 524 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 GRIK4Q16099 956 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 LARP1BQ659C4 914 aaKnown RBP24.49■■□□□ 1.51
CLN3-207ENST00000395653 MIER3Q7Z3K6 550 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 TDHQ8IZJ6 230 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 RETREG2Q8NC44 543 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 ATP8B4Q8TF62 1192 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 GABBR1Q9UBS5 961 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 VAV3Q9UKW4 847 aa24.49■■□□□ 1.51
CLN3-207ENST00000395653 NOL7Q9UMY1 257 aaKnown RBP24.49■■□□□ 1.51
CLN3-207ENST00000395653 POTEB3A0JP26 581 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 RRN3P2A6NIE6 340 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 NEMFO60524 1076 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 INSRRP14616 1297 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 CCL23P55773 120 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 CALCRLQ16602 461 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 TRIM71Q2Q1W2 868 aaKnown RBP24.48■■□□□ 1.51
CLN3-207ENST00000395653 POTEBQ6S5H4 581 aa24.48■■□□□ 1.51
CLN3-207ENST00000395653 HBP1O60381 514 aa24.47■■□□□ 1.51
CLN3-207ENST00000395653 ATP2B1P20020 1258 aa24.47■■□□□ 1.51
CLN3-207ENST00000395653 HSCBQ8IWL3 235 aa24.47■■□□□ 1.51
CLN3-207ENST00000395653 WNT8BQ93098 351 aa24.47■■□□□ 1.51
CLN3-207ENST00000395653 TANC1Q9C0D5 1861 aa24.47■■□□□ 1.51
CLN3-207ENST00000395653 MBLAC1A4D2B0 266 aaPredicted RBP24.46■■□□□ 1.51
CLN3-207ENST00000395653 IQCF3P0C7M6 154 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 CKBP12277 381 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 ATP4AP20648 1035 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 PDCP20941 246 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 RFC2P35250 354 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 EPHB4P54760 987 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 HABP4Q5JVS0 413 aaKnown RBP24.46■■□□□ 1.51
CLN3-207ENST00000395653 MCTP1Q6DN14 999 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 BBXQ8WY36 941 aaPredicted RBP24.46■■□□□ 1.51
CLN3-207ENST00000395653 SCLYQ96I15 445 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 IL23AQ9NPF7 189 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 TUBE1Q9UJT0 475 aa24.46■■□□□ 1.51
CLN3-207ENST00000395653 TRIP12Q14669 1992 aaPredicted RBP24.46■■□□□ 1.51
CLN3-207ENST00000395653 SELPP16109 830 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 MCM7P33993 719 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 TTC38Q5R3I4 469 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 MARCH8Q5T0T0 291 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 TAF2Q6P1X5 1199 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 LRRC8DQ7L1W4 858 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 FAM167AQ96KS9 214 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 MTMR9Q96QG7 549 aa24.45■■□□□ 1.51
CLN3-207ENST00000395653 COL1A2P08123 1366 aa24.45■■□□□ 1.5
CLN3-207ENST00000395653 TRIOBPQ9H2D6 2365 aa24.45■■□□□ 1.5
CLN3-207ENST00000395653 CAND2O75155 1236 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 PARNO95453 639 aaKnown RBP24.44■■□□□ 1.5
CLN3-207ENST00000395653 IGBP1P78318 339 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 SPIRE1Q08AE8 756 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 ZNF484Q5JVG2 852 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 PSRC1Q6PGN9 363 aaPredicted RBP24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms