RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PADI6Q6TGC4 694 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 GLT1D1Q96MS3 346 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 POLR3EQ9NVU0 708 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 ATP11BQ9Y2G3 1177 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 K7ERI5 159 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 ARPP19P56211 112 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TRPC3Q13507 836 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TAF12Q16514 161 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 NELFBQ8WX92 580 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 MROH8Q9H579 483 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 SLC38A10Q9HBR0 1119 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 GDAQ9Y2T3 454 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 KBTBD13C9JR72 458 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 KRT5P13647 590 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TCF7P36402 384 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-205ENST00000392004 GPR142Q7Z601 462 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 SAPCD2Q86UD0 394 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 KSR1Q8IVT5 923 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TEPSINQ96N21 525 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 DEFB118Q96PH6 123 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 ADPGKQ9BRR6 497 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 KIFC3Q9BVG8 833 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TSPYL1Q9H0U9 437 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 SH3GLB2Q9NR46 395 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TBC1D22BQ9NU19 505 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-205ENST00000392004 KDM3AQ9Y4C1 1321 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 ZBTB39O15060 712 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 TNNT3P45378 269 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-205ENST00000392004 ST3GAL1Q11201 340 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 GPS2Q13227 327 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 ARHGAP44Q17R89 818 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 TMCO3Q6UWJ1 677 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 SEPT1Q8WYJ6 367 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 UBXN4Q92575 508 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 DDX12PQ92771 950 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 MMS19Q96T76 1030 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 RIOX1Q9H6W3 641 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 SYNCQ9H7C4 482 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 AFG3L2Q9Y4W6 797 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 COL4A3BPQ9Y5P4 624 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 NUP98P52948 1817 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 USP27XA6NNY8 438 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 CD19P15391 556 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 PPFIA1Q13136 1202 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 CUL4BQ13620 913 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 ARID5BQ14865 1188 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 SARM1Q6SZW1 724 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 RSPH3Q86UC2 560 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 RNF149Q8NC42 400 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 NOC4LQ9BVI4 516 aaKnown RBP11.33□□□□□ -0.6
COL6A3-205ENST00000392004 TXNRD2Q9NNW7 524 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 NLRC4Q9NPP4 1024 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 RCOR1Q9UKL0 485 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 TBC1D12O60347 775 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 RPN1P04843 607 aaKnown RBP11.33□□□□□ -0.6
COL6A3-205ENST00000392004 MMP14P50281 582 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 APLP1P51693 650 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 TFAMQ00059 246 aaKnown RBP11.33□□□□□ -0.6
COL6A3-205ENST00000392004 MTMR14Q8NCE2 650 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 MICAL1Q8TDZ2 1067 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 MXRA8Q9BRK3 442 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 GPRC5CQ9NQ84 441 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 RNF19AQ9NV58 838 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 TMEM51Q9NW97 253 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 NUB1Q9Y5A7 615 aa11.33□□□□□ -0.6
COL6A3-205ENST00000392004 SRPRBQ9Y5M8 271 aaKnown RBP11.33□□□□□ -0.6
COL6A3-205ENST00000392004 MSH4O15457 936 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 CCP110O43303 1012 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 EIF3JO75822 258 aaKnown RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 SFPQP23246 707 aaKnown RBP eCLIP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 GJC1P36383 396 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 KRT76Q01546 638 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 TKFCQ3LXA3 575 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 MYOCDQ8IZQ8 938 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 WDR18Q9BV38 432 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 KIAA1468Q9P260 1216 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 MYPNQ86TC9 1320 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 STK36Q9NRP7 1315 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 CNTNAP1P78357 1384 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 SLX4Q8IY92 1834 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 VGLL3A8MV65 326 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 CBFA2T2O43439 604 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 ABL1P00519 1130 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PRKAR2AP13861 404 aaKnown RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 RPL13P26373 211 aaKnown RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PAK1Q13153 545 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PROCA1Q8NCQ7 364 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 SENP6Q9GZR1 1112 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 FAM207AQ9NSI2 230 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 FAM184BQ9ULE4 1060 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 LRFN2Q9ULH4 789 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PFASO15067 1338 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PITPNM2Q9BZ72 1349 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PKD1L3Q7Z443 1732 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 FAM86B1E9PN63 330 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 GH1P01241 217 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 FAM86B2P0C5J1 330 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 EPB41P11171 864 aaKnown RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 CLCN3P51790 818 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms