RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 DYRK3O43781 588 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MX1P20591 662 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SERPINB3P29508 390 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CIITAP33076 1130 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 IST1P53990 364 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 OCA2Q04671 838 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TRAP1Q12931 704 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TBC1D25Q3MII6 688 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ARSHQ5FYA8 562 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ATAD3BQ5T9A4 648 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ANO1Q5XXA6 986 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ATP6V1C2Q8NEY4 427 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MDM1Q8TC05 714 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 IFT43Q96FT9 208 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CCT8L2Q96SF2 557 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ADI1Q9BV57 179 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC8Q9H0W5 538 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 RSPH9Q9H1X1 276 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MCM9Q9NXL9 1143 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 BAIAP2L1Q9UHR4 511 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TPCN1Q9ULQ1 816 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 PCDHGB4Q9UN71 923 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC162PA2VCL2 907 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MEIS1O00470 390 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SERPINB2P05120 415 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SYKP43405 635 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CCT4P50991 539 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 PLIN5Q00G26 463 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SLFN12LQ6IEE8 588 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SULT6B1Q6IMI4 303 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 LRRC70Q7Z2Q7 622 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 JPH2Q9BR39 696 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 FAM192AQ9GZU8 254 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CNNM2Q9H8M5 875 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MRPL44Q9H9J2 332 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MRPL39Q9NYK5 338 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CNPY2Q9Y2B0 182 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SH3GLB1Q9Y371 365 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ZSCAN22P10073 491 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF24P17028 368 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 STX2P32856 288 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 FEN1P39748 380 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC15Q0P6D6 951 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 RASGRF1Q13972 1273 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ASIC2Q16515 512 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SLC27A3Q5K4L6 730 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF438Q7Z4V0 828 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 NIM1KQ8IY84 436 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MOSPD2Q8NHP6 518 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 AHCYL2Q96HN2 611 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 NLRP3Q96P20 1036 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 PRMT1Q99873 361 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 THUMPD2Q9BTF0 503 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 RIMKLBQ9ULI2 386 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 L3MBTL1Q9Y468 752 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 BHMG1C9JSJ3 638 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 CYTH3O43739 400 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 KRT20P35900 424 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SESN2P58004 480 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PDCD4Q53EL6 469 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SLC30A9Q6PML9 568 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GMCL1Q96IK5 515 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ACOX2Q99424 681 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 S100A13Q99584 98 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 USB1Q9BQ65 265 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PACSIN2Q9UNF0 486 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RUSC2Q8N2Y8 1516 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ARL5CA6NH57 179 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 MCF2LO15068 1137 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ADD1P35611 737 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 KCNJ6P48051 423 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PDE4DQ08499 809 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 THOC7Q6I9Y2 204 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 CNSTQ6PJW8 725 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 ZBTB8OSQ8IWT0 167 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PPP1R13BQ96KQ4 1090 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PHACTR3Q96KR7 559 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 PSMB7Q99436 277 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SH3GL2Q99962 352 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RNF14Q9UBS8 474 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 SEL1LQ9UBV2 794 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 APPL1Q9UKG1 709 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 UBN2Q6ZU65 1347 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 MYO18AQ92614 2054 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 MYO1DO94832 1006 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 RPN1P04843 607 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 HCLS1P14317 486 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 MAP4P27816 1152 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 GCLCP48506 637 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 HADHQ16836 314 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 KIAA1755Q5JYT7 1200 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 OTUD6AQ7L8S5 288 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 R3HCC1LQ7Z5L2 792 aaKnown RBP4.97□□□□□ -1.61
SCN1A-202ENST00000375405 NLRX1Q86UT6 975 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 KLHL7Q8IXQ5 586 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 USHBP1Q8N6Y0 703 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 TCP11Q8WWU5 503 aa4.97□□□□□ -1.61
SCN1A-202ENST00000375405 EYA3Q99504 573 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms