RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SART1O43290 800 aaKnown RBP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 PTK2Q05397 1052 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 CCDC24Q8N4L8 307 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 UBLCP1Q8WVY7 318 aaPredicted RBP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 CCDC114Q96M63 670 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.13■■□□□ 1.291e-8■■■■□ 25.1
UPF3A-202ENST00000375299 TACO1Q9BSH4 297 aaKnown RBP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 AP1M1Q9BXS5 423 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 UBA5Q9GZZ9 404 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 TBC1D7Q9P0N9 293 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 NARFQ9UHQ1 456 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 NOC2LQ9Y3T9 749 aaKnown RBP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 CDK5RAP2Q96SN8 1893 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 C5orf60A6NFR6 353 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 CCDC188H7C350 402 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 PAEPP09466 180 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 ZBTB48P10074 688 aaPredicted RBP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 PPP4CP60510 307 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 QPCTQ16769 361 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 GOLPH3Q9H4A6 298 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 RIOX1Q9H6W3 641 aa23.13■■□□□ 1.29
UPF3A-202ENST00000375299 BMP2KQ9NSY1 1161 aaPredicted RBP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 BCCIPQ9P287 314 aaKnown RBP eCLIP23.13■■□□□ 1.29
UPF3A-202ENST00000375299 IRS2Q9Y4H2 1338 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 CCDC172P0C7W6 258 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 TMOD1P28289 359 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 CDK8P49336 464 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 DIXDC1Q155Q3 683 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 ZNF571Q7Z3V5 609 aaPredicted RBP23.12■■□□□ 1.29
UPF3A-202ENST00000375299 ZC3H3Q8IXZ2 948 aaKnown RBP23.12■■□□□ 1.29
UPF3A-202ENST00000375299 OSBPL7Q9BZF2 842 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 DDX47Q9H0S4 455 aaKnown RBP23.12■■□□□ 1.29
UPF3A-202ENST00000375299 PCDHA2Q9Y5H9 948 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 CDR1P51861 262 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 GSTO1P78417 241 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 ODF2Q5BJF6 829 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 C16orf86Q6ZW13 317 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 IRF2BP2Q7Z5L9 587 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 CCDC65Q8IXS2 484 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 METTL13Q8N6R0 699 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 COA7Q96BR5 231 aa23.12■■□□□ 1.29
UPF3A-202ENST00000375299 CNOT8Q9UFF9 292 aaKnown RBP23.12■■□□□ 1.29
UPF3A-202ENST00000375299 KCNH2Q12809 1159 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 WDR66Q8TBY9 1149 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 SEC16BQ96JE7 1060 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 KCTD10Q9H3F6 313 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 COL24A1Q17RW2 1714 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 SSBP05455 408 aaKnown RBP eCLIP23.11■■□□□ 1.29
UPF3A-202ENST00000375299 FLT3P36888 993 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 PREPLQ4J6C6 727 aaPredicted RBP23.11■■□□□ 1.29
UPF3A-202ENST00000375299 ANKRD20A8PQ5CZ79 823 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 ARMC9Q7Z3E5 817 aa23.11■■□□□ 1.29
UPF3A-202ENST00000375299 NOVA2Q9UNW9 492 aaKnown RBP23.11■■□□□ 1.29
UPF3A-202ENST00000375299 BZW2Q9Y6E2 419 aaKnown RBP23.11■■□□□ 1.29
UPF3A-202ENST00000375299 SBF2Q86WG5 1849 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 USP17L5A8MUK1 530 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 TM4SF1P30408 202 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 PPARDQ03181 441 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 PROCA1Q8NCQ7 364 aaPredicted RBP23.1■■□□□ 1.29
UPF3A-202ENST00000375299 SCFD1Q8WVM8 642 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 RAPGEF5Q92565 580 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 CEP95Q96GE4 821 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 SLITRK6Q9H5Y7 841 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 NAGPAQ9UK23 515 aa23.1■■□□□ 1.29
UPF3A-202ENST00000375299 KRIT1O00522 736 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 TNNI2P48788 182 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 ADAM9Q13443 819 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 PTPROQ16827 1216 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 SPRED3Q2MJR0 410 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 PTF1AQ7RTS3 328 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 CACNA2D3Q8IZS8 1091 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 TPCN2Q8NHX9 752 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 LEMD3Q9Y2U8 911 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 KDM3AQ9Y4C1 1321 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 TMCO5BA8MYB1 307 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 DAPK3O43293 454 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 ACTN1P12814 892 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 BYSLQ13895 437 aaKnown RBP23.09■■□□□ 1.29
UPF3A-202ENST00000375299 HYIQ5T013 277 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 TPTE2Q6XPS3 522 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 TMC3Q7Z5M5 1100 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 RASGEF1CQ8N431 466 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 SPAG5Q96R06 1193 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 NHSQ6T4R5 1651 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 ATP8B3O60423 1300 aa23.09■■□□□ 1.29
UPF3A-202ENST00000375299 DNM1LO00429 736 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 CETN3O15182 167 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 RPS6KA4O75676 772 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 GRIK5Q16478 980 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 FAM98CQ17RN3 349 aaKnown RBP23.08■■□□□ 1.29
UPF3A-202ENST00000375299 DPY19L2P1Q6NXN4 242 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 PPP4R3CPQ6ZMV5 832 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 HAS1Q92839 578 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 TATDN2Q93075 761 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 NT5C3AQ9H0P0 336 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 EMILIN3Q9NT22 766 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 AMACRQ9UHK6 382 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 FRMPD2Q68DX3 1309 aaPredicted RBP23.08■■□□□ 1.29
UPF3A-202ENST00000375299 NEDD9Q14511 834 aa23.08■■□□□ 1.29
UPF3A-202ENST00000375299 SNCBQ16143 134 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms