RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 PLEKHA4Q9H4M7 779 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 UBE4BO95155 1302 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 NCKAP1LP55160 1127 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 FAM129AQ9BZQ8 928 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 ADKP55263 362 aaKnown RBP18.87■□□□□ 0.61
SMAD4-201ENST00000342988 ABCE1P61221 599 aaKnown RBP18.87■□□□□ 0.61
SMAD4-201ENST00000342988 RDH13Q8NBN7 331 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.87■□□□□ 0.61
SMAD4-201ENST00000342988 STON1Q9Y6Q2 735 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 CHUKO15111 745 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 MEI1Q5TIA1 1274 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 RMDN1Q96DB5 314 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 LRRC4Q9HBW1 653 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 TBK1Q9UHD2 729 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 ZNF18P17022 549 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 CYP4F22Q6NT55 531 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 APPL2Q8NEU8 664 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 PLEKHA8Q96JA3 519 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 CFBP00751 764 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 SUPT20HQ8NEM7 779 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 PRPF4O43172 522 aaKnown RBP eCLIP18.86■□□□□ 0.61
SMAD4-201ENST00000342988 ATXN3P54252 364 aaPredicted RBP18.86■□□□□ 0.61
SMAD4-201ENST00000342988 BTNL9Q6UXG8 535 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 CCDC103Q8IW40 242 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 IARS2Q9NSE4 1012 aaKnown RBP18.86■□□□□ 0.61
SMAD4-201ENST00000342988 FANCD2Q9BXW9 1451 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 C5orf58C9J3I9 102 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 H2AFZP0C0S5 128 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 NSUN2Q08J23 767 aaKnown RBP eCLIP18.86■□□□□ 0.611e-5■■■■□ 24.6
SMAD4-201ENST00000342988 ARMCX5Q6P1M9 558 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 H2AFVQ71UI9 128 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 FOPNLQ96NB1 174 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 STXBP2Q15833 593 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 NFU1Q9UMS0 254 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 TRAF3IP3Q9Y228 551 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 TMPRSS15P98073 1019 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 RBBP7Q16576 425 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 CHMP1BQ7LBR1 199 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 ZFP69BQ9UJL9 534 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 S100A9P06702 114 aaKnown RBP18.86■□□□□ 0.61
SMAD4-201ENST00000342988 PITPNM3Q9BZ71 974 aa18.86■□□□□ 0.61
SMAD4-201ENST00000342988 C6orf203Q9P0P8 240 aaPredicted RBP18.86■□□□□ 0.61
SMAD4-201ENST00000342988 CSTF3Q12996 717 aaKnown RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 ANKRD49Q8WVL7 239 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 ECT2Q9H8V3 914 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 BAZ2BQ9UIF8 2168 aaKnown RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 NR1D1P20393 614 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 PARP10Q53GL7 1025 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 NELFCDQ8IXH7 590 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 RFWD2Q8NHY2 731 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 DDX25Q9UHL0 483 aaKnown RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 LRRIQ4A6NIV6 560 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 PODXLO00592 558 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 AFPP02771 609 aaKnown RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 PSMC6P62333 389 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 CAV1Q03135 178 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 TRADDQ15628 312 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 KSR2Q6VAB6 950 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 LARP4BQ92615 738 aaKnown RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 KRT38O76015 456 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 NNMTP40261 264 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 KIRREL3Q8IZU9 778 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 SIX6OS1Q8N1H7 587 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 IFT43Q96FT9 208 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 DNAJC7Q99615 494 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 ANKRD36BQ8N2N9 1353 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 TBC1D12O60347 775 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 EHHADHQ08426 723 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 GOLPH3LQ9H4A5 285 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 DMRT2Q9Y5R5 561 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 FAM107AO95990 144 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 NCALDP61601 193 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 LBRQ14739 615 aaKnown RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 TSC22D1Q15714 1073 aa18.85■□□□□ 0.61
SMAD4-201ENST00000342988 ZNF274Q96GC6 653 aaPredicted RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 RPAP3Q9H6T3 665 aaPredicted RBP18.85■□□□□ 0.61
SMAD4-201ENST00000342988 TESPA1A2RU30 521 aaPredicted RBP18.84■□□□□ 0.61
SMAD4-201ENST00000342988 MESDQ14696 234 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 GTSE1Q9NYZ3 720 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 SOS1Q07889 1333 aaPredicted RBP18.84■□□□□ 0.61
SMAD4-201ENST00000342988 TBC1D9BQ66K14 1250 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 DNAJC24Q6P3W2 148 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 NT5C1BQ96P26 610 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 FOXP3Q9BZS1 431 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 SYNDIG1LA6NDD5 238 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 CDC27P30260 824 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 HADHAP40939 763 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 OLFM1Q99784 485 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 PPARGC1AQ9UBK2 798 aaKnown RBP18.84■□□□□ 0.61
SMAD4-201ENST00000342988 PPP2R2CQ9Y2T4 447 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 EIF4G3O43432 1585 aaKnown RBP18.84■□□□□ 0.61
SMAD4-201ENST00000342988 SLC44A4Q53GD3 710 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 ATAD3BQ5T9A4 648 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 EPM2AIP1Q7L775 607 aaPredicted RBP18.84■□□□□ 0.61
SMAD4-201ENST00000342988 ZBED1O96006 694 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 CCDC149Q6ZUS6 474 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 ARL2BPQ9Y2Y0 163 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 COPEO14579 308 aa18.84■□□□□ 0.61
SMAD4-201ENST00000342988 ARHGAP17Q68EM7 881 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms