RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PFASO15067 1338 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 TBCAO75347 108 aaKnown RBP14.86□□□□□ -0.03
HMGB1-202ENST00000339872 SKILP12757 684 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 INPP4AQ96PE3 977 aaPredicted RBP14.86□□□□□ -0.03
HMGB1-202ENST00000339872 LRRC10BA6NIK2 292 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 RSPH10B2B2RC85 870 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 P4HBP07237 508 aaKnown RBP14.86□□□□□ -0.03
HMGB1-202ENST00000339872 RSPH10BP0C881 870 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 CNTN2Q02246 1040 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 LRRC63Q05C16 580 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 SNAPC2Q13487 334 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 NOLC1Q14978 699 aaKnown RBP eCLIP14.86□□□□□ -0.03
HMGB1-202ENST00000339872 SFR1Q86XK3 245 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 FAM114A1Q8IWE2 563 aa14.86□□□□□ -0.03
HMGB1-202ENST00000339872 CNOT6LQ96LI5 555 aaKnown RBP14.86□□□□□ -0.03
HMGB1-202ENST00000339872 CNMDO75829 334 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 OSBPP22059 807 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 GOLGA8FQ08AF8 430 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 GOLGA8DPQ0D2H9 430 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 TBX2Q13207 712 aaPredicted RBP14.85□□□□□ -0.03
HMGB1-202ENST00000339872 TSG101Q99816 390 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 MOV10L1Q9BXT6 1211 aaKnown RBP14.85□□□□□ -0.03
HMGB1-202ENST00000339872 ZSWIM4Q9H7M6 989 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 RRAGCQ9HB90 399 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 POLD4Q9HCU8 107 aa14.85□□□□□ -0.03
HMGB1-202ENST00000339872 PES1O00541 588 aaKnown RBP14.84□□□□□ -0.03
HMGB1-202ENST00000339872 MAFGO15525 162 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 RGS20O76081 388 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 PBX1P40424 430 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 KRT76Q01546 638 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 GPAT2Q6NUI2 795 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 C1orf186Q6ZWK4 172 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 NELFCDQ8IXH7 590 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 DNERQ8NFT8 737 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 MYH11P35749 1972 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 WDR81Q562E7 1941 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 ARHGEF35A5YM69 484 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 WDR64B1ANS9 1081 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 NRDCO43847 1150 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 STAM2O75886 525 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 KIF20AO95235 890 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 CCNE2O96020 404 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 PRKCSHP14314 528 aaPredicted RBP14.84□□□□□ -0.03
HMGB1-202ENST00000339872 JAK3P52333 1124 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 GNPTABQ3T906 1256 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 SCFD1Q8WVM8 642 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 TXNRD2Q9NNW7 524 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 COL4A3BPQ9Y5P4 624 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 ASTN1O14525 1302 aa14.84□□□□□ -0.03
HMGB1-202ENST00000339872 FAM13AO94988 1023 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 ERCC3P19447 782 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 SFNP31947 248 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 QARSP47897 775 aaKnown RBP14.83□□□□□ -0.03
HMGB1-202ENST00000339872 CASP5P51878 434 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 UBXN1Q04323 297 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 CDHR1Q96JP9 859 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 IWS1Q96ST2 819 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 TUBGCP2Q9BSJ2 902 aa14.83□□□□□ -0.03
HMGB1-202ENST00000339872 SFI1A8K8P3 1242 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 POTEB2H3BUK9 544 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 FGFR1OPO95684 399 aaKnown RBP14.83□□□□□ -0.04
HMGB1-202ENST00000339872 KCNA2P16389 499 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 MTIF2P46199 727 aaKnown RBP14.83□□□□□ -0.04
HMGB1-202ENST00000339872 ALDH5A1P51649 535 aaPredicted RBP14.83□□□□□ -0.04
HMGB1-202ENST00000339872 STXBP2Q15833 593 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 ZCWPW2Q504Y3 356 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 MRPL44Q9H9J2 332 aaKnown RBP14.83□□□□□ -0.04
HMGB1-202ENST00000339872 SPTLC3Q9NUV7 552 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 RBPJLQ9UBG7 517 aa14.83□□□□□ -0.04
HMGB1-202ENST00000339872 LRRC37A2A6NM11 1700 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 LGALS16A8MUM7 142 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 SLC25A27O95847 323 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 TPM2P07951 284 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 GAP43P17677 238 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 ADKP55263 362 aaKnown RBP14.82□□□□□ -0.04
HMGB1-202ENST00000339872 MKRN3Q13064 507 aaKnown RBP14.82□□□□□ -0.04
HMGB1-202ENST00000339872 UGCGQ16739 394 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 ZNF746Q6NUN9 644 aaPredicted RBP14.82□□□□□ -0.04
HMGB1-202ENST00000339872 ITIH6Q6UXX5 1313 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 R3HDMLQ9H3Y0 253 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 BCAS3Q9H6U6 928 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 GBA2Q9HCG7 927 aaPredicted RBP14.82□□□□□ -0.04
HMGB1-202ENST00000339872 KCND2Q9NZV8 630 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 UNCXA6NJT0 531 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 B4DLN1 442 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 MYBP10242 640 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 FSTL1Q12841 308 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 CEP135Q66GS9 1140 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 FOXR2Q6PJQ5 311 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 LRRC55Q6ZSA7 311 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 PPFIBP1Q86W92 1011 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 MYCT1Q8N699 235 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 TC2NQ8N9U0 490 aa14.82□□□□□ -0.04
HMGB1-202ENST00000339872 CCDC43Q96MW1 224 aaKnown RBP14.82□□□□□ -0.04
HMGB1-202ENST00000339872 GCNT3O95395 438 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 YWHABP31946 246 aaKnown RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 PSMC5P62195 406 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 SP4Q02446 784 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 Q3C1V9 767 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 PADI6Q6TGC4 694 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms