RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TOB1P50616 345 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 ORC2Q13416 577 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 PTGISQ16647 500 aa17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 PLPPR4Q7Z2D5 763 aa17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 TRIM43Q96BQ3 446 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 TMEM60Q9H2L4 133 aa17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 TBX21Q9UL17 535 aa17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 C17orf102A2RUQ5 167 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 PPP2R5CQ13362 524 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 PDXDC2PQ6P474 469 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 B3GNT9Q6UX72 402 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 AFAP1L1Q8TED9 768 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 GABBR1Q9UBS5 961 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 TRPC6Q9Y210 931 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 PCDHB6Q9Y5E3 794 aa17.91■□□□□ 0.46
CCDC28A-201ENST00000332797 KIAA0355O15063 1070 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 STX6O43752 255 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 CYP2C9P11712 490 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 TXKP42681 527 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 ZNF200P98182 395 aaPredicted RBP17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 PPFIA1Q13136 1202 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 BECN1Q14457 450 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 HIC1Q14526 733 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 PLCB4Q15147 1175 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 RILPL1Q5EBL4 403 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 NCAPH2Q6IBW4 605 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 BRAPQ7Z569 592 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 RDM1Q8NG50 284 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 MTMR9Q96QG7 549 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 PPP1R12CQ9BZL4 782 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 SETD4Q9NVD3 440 aa17.9■□□□□ 0.46
CCDC28A-201ENST00000332797 LTBP2Q14767 1821 aa17.89■□□□□ 0.46
CCDC28A-201ENST00000332797 EML1O00423 815 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 OR52Z1P0C646 297 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 RAG1P15918 1043 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 SLC26A2P50443 739 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 CKAP2LQ8IYA6 745 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 LMBR1Q8WVP7 490 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 ATP6V0A1Q93050 837 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 HIPK3Q9H422 1215 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 TTC12Q9H892 705 aaPredicted RBP17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 PCDHA12Q9UN75 941 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 MTMR6Q9Y217 621 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 MAFBQ9Y5Q3 323 aaPredicted RBP17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 IGSF9BQ9UPX0 1349 aa17.89■□□□□ 0.45
CCDC28A-201ENST00000332797 POTEB3A0JP26 581 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 GNAT1P11488 350 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 ITGB8P26012 769 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 HOXC8P31273 242 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 IGBP1P78318 339 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 GRIK4Q16099 956 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 UGCGQ16739 394 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 PRPF38BQ5VTL8 546 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 POTEBQ6S5H4 581 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 TRMT1LQ7Z2T5 733 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 CTAGE1Q96RT6 745 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 LBHD1Q9BQE6 289 aaPredicted RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 NOC4LQ9BVI4 516 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 NRCAMQ92823 1304 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 TREHO43280 583 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 TIMP1P01033 207 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 INSRRP14616 1297 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 ATP4AP20648 1035 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 MAGEA10P43363 369 aaPredicted RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 MDM2Q00987 491 aaPredicted RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 SPIRE1Q08AE8 756 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 RESTQ13127 1097 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 BANK1Q8NDB2 785 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 ATP8B4Q8TF62 1192 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 BADQ92934 168 aa17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 TNPO1Q92973 898 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-201ENST00000332797 CYP2C18P33260 490 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 PRKCEQ02156 737 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 PTGDRQ13258 359 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 PTK7Q13308 1070 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 CCDC155Q8N6L0 562 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 C4orf32Q8N8J7 132 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 TRAPPC12Q8WVT3 735 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 UMODL1Q5DID0 1318 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 CEP290O15078 2479 aa17.87■□□□□ 0.45
CCDC28A-201ENST00000332797 POTEMA6NI47 508 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 ZNF862O60290 1169 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 HBP1O60381 514 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 TECP42680 631 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 EPHA7Q15375 998 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 TMEM266Q2M3C6 531 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 FOXD4L5Q5VV16 416 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 FOXD4L4Q8WXT5 416 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 DHX38Q92620 1227 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 FAM167AQ96KS9 214 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 TUBE1Q9UJT0 475 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 WDR81Q562E7 1941 aa17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 MYH9P35579 1960 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-201ENST00000332797 RRN3P2A6NIE6 340 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 OATP04181 439 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 CCL23P55773 120 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 PSMC5P62195 406 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 ADAM17P78536 824 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 BFSP2Q13515 415 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms