RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 PJA2O43164 708 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 NCK2O43639 380 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 MED24O75448 989 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 NOL4O94818 638 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 SPDYE6P0CI01 402 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 STAT3P40763 770 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 IQCEQ6IPM2 695 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 ARHGAP27Q6ZUM4 889 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 GMLQ99445 158 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 DHX36Q9H2U1 1008 aaKnown RBP17.71■□□□□ 0.43
USHBP1-202ENST00000324554 KCTD10Q9H3F6 313 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 KANSL2Q9H9L4 492 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 CEP72Q9P209 647 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 SLC26A4O43511 780 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 IVLP07476 585 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 PRLRP16471 622 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 MAGEA1P43355 309 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 MARSP56192 900 aaKnown RBP17.71■□□□□ 0.43
USHBP1-202ENST00000324554 RRP1BQ14684 758 aaKnown RBP17.71■□□□□ 0.43
USHBP1-202ENST00000324554 HERC4Q5GLZ8 1057 aaPredicted RBP17.71■□□□□ 0.43
USHBP1-202ENST00000324554 TRIM59Q8IWR1 403 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 NLGN2Q8NFZ4 835 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 CRYGNQ8WXF5 182 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 P2RX7Q99572 595 aaKnown RBP17.71■□□□□ 0.43
USHBP1-202ENST00000324554 CRACR2AQ9BSW2 395 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 TAOK3Q9H2K8 898 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 NLRC4Q9NPP4 1024 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 RRP15Q9Y3B9 282 aaKnown RBP17.71■□□□□ 0.43
USHBP1-202ENST00000324554 FRMD3A2A2Y4 597 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 NFKBIEO00221 500 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 GNA14O95837 355 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 MATR3P43243 847 aaKnown RBP eCLIP17.7■□□□□ 0.42
USHBP1-202ENST00000324554 SLC12A3P55017 1021 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 RASSF7Q02833 373 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 MOXD1Q6UVY6 613 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 SIAH1Q8IUQ4 282 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 SLFN12Q8IYM2 578 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 ALS2CR12Q96Q35 445 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 POTEFA5A3E0 1075 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 TLR2O60603 784 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 POTEIP0CG38 1075 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 SLC7A5Q01650 507 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 SPIRE1Q08AE8 756 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 AP3B2Q13367 1082 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 NBPF9Q3BBW0 867 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 ARSHQ5FYA8 562 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 FAM83BQ5T0W9 1011 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 POTEGQ6S5H5 508 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 POTEEQ6S8J3 1075 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 ETNPPLQ8TBG4 499 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 EMILIN3Q9NT22 766 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.7■□□□□ 0.42
USHBP1-202ENST00000324554 ZNF70Q9UC06 446 aaPredicted RBP17.7■□□□□ 0.42
USHBP1-202ENST00000324554 FAM184BQ9ULE4 1060 aa17.7■□□□□ 0.42
USHBP1-202ENST00000324554 RBAK-RBAKDNI3L0D1 243 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 EGFRP00533 1210 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 ARHGAP4P98171 946 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 ITIH3Q06033 890 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 TDRD12Q587J7 1177 aaKnown RBP17.69■□□□□ 0.42
USHBP1-202ENST00000324554 MIGA2Q7L4E1 593 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 ZC3H3Q8IXZ2 948 aaKnown RBP17.69■□□□□ 0.42
USHBP1-202ENST00000324554 LSM14BQ9BX40 385 aaKnown RBP17.69■□□□□ 0.42
USHBP1-202ENST00000324554 PLEKHA4Q9H4M7 779 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 HYOU1Q9Y4L1 999 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.69■□□□□ 0.42
USHBP1-202ENST00000324554 PITPNM2Q9BZ72 1349 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 SLC9C1Q4G0N8 1177 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 HAUS3Q68CZ6 603 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 C10orf67Q8IYJ2 551 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 GOLGA6L1Q8N7Z2 621 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 JDP2Q8WYK2 163 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 SYN2Q92777 582 aaPredicted RBP17.69■□□□□ 0.42
USHBP1-202ENST00000324554 TLR10Q9BXR5 811 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 TMEM39BQ9GZU3 492 aa17.69■□□□□ 0.42
USHBP1-202ENST00000324554 NUCKS1Q9H1E3 243 aaKnown RBP17.69■□□□□ 0.42
USHBP1-202ENST00000324554 A0A0U1RQG5 324 aaPredicted RBP17.68■□□□□ 0.42
USHBP1-202ENST00000324554 BUB1O43683 1085 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 TCP1P17987 556 aaKnown RBP17.68■□□□□ 0.42
USHBP1-202ENST00000324554 POLR2FP61218 127 aaKnown RBP17.68■□□□□ 0.42
USHBP1-202ENST00000324554 ICA1Q05084 483 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 GRIPAP1Q4V328 841 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 PRR16Q569H4 304 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 SFMBT2Q5VUG0 894 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 TATDN1Q6P1N9 297 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 SND1Q7KZF4 910 aaKnown RBP eCLIP17.68■□□□□ 0.42
USHBP1-202ENST00000324554 CATSPER3Q86XQ3 398 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 HDAC9Q9UKV0 1011 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 GOLGA6BA6NDN3 693 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 KRT18P05783 430 aaKnown RBP17.68■□□□□ 0.42
USHBP1-202ENST00000324554 SNAP25P60880 206 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 APBA1Q02410 837 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 CCDC70Q6NSX1 233 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 LENG9Q96B70 501 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 AMNQ9BXJ7 453 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 TMOD2Q9NZR1 351 aa17.68■□□□□ 0.42
USHBP1-202ENST00000324554 F5H6K3 240 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 GH2P01242 217 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 SERPING1P05155 500 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 PRELPP51888 382 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 KLRC3Q07444 240 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms