RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 WDR78Q5VTH9 848 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 TTI2Q6NXR4 508 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 DCUN1D2Q6PH85 259 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 SPICE1Q8N0Z3 855 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 NR3C1P04150 777 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 UAP1Q16222 522 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-201ENST00000323668 MS4A14Q96JA4 679 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 KBTBD4Q9NVX7 518 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 A0A087X0B3 334 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 STRN3Q13033 797 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 AP3B2Q13367 1082 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 TMC4Q7Z404 712 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 WDR11Q9BZH6 1224 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 DNAI2Q9GZS0 605 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16■□□□□ 0.15
TCOF1-201ENST00000323668 STK38LQ9Y2H1 464 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 RIMS1Q86UR5 1692 aaKnown RBP16■□□□□ 0.15
TCOF1-201ENST00000323668 SUN1O94901 812 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 NSMFQ6X4W1 530 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 NBPF3Q9H094 633 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 DUSP10Q9Y6W6 482 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 SFI1A8K8P3 1242 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 BMP3P12645 472 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 TNNI1P19237 187 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 BUD13Q9BRD0 619 aaKnown RBP eCLIP16■□□□□ 0.157e-7■□□□□ 9.5
TCOF1-201ENST00000323668 RBM12Q9NTZ6 932 aaKnown RBP16■□□□□ 0.15
TCOF1-201ENST00000323668 USP17L10C9JJH3 530 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 SMC6Q96SB8 1091 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 DHX36Q9H2U1 1008 aaKnown RBP16■□□□□ 0.15
TCOF1-201ENST00000323668 UBE2TQ9NPD8 197 aaPredicted RBP16■□□□□ 0.15
TCOF1-201ENST00000323668 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16■□□□□ 0.15
TCOF1-201ENST00000323668 SMARCAL1Q9NZC9 954 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 DNAJC12Q9UKB3 198 aa16■□□□□ 0.15
TCOF1-201ENST00000323668 EIF3HO15372 352 aaKnown RBP eCLIP15.99■□□□□ 0.155e-6■■■□□ 14.9
TCOF1-201ENST00000323668 SLMAPQ14BN4 828 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 SH2D3CQ8N5H7 860 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 CACNA1FO60840 1977 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 LRRC10BA6NIK2 292 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 SLCO1A2P46721 670 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 FAM102BQ5T8I3 360 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 RHOT2Q8IXI1 618 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 FERMT1Q9BQL6 677 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 JPH2Q9BR39 696 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-201ENST00000323668 GMNCA6NCL1 334 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 MYO1FO00160 1098 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 PPP1R37O75864 691 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 MFAP3P55082 362 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 UBXN2AP68543 259 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 ZNF653Q96CK0 615 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 ZNF577Q9BSK1 485 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 VPS37BQ9H9H4 285 aa15.99■□□□□ 0.15
TCOF1-201ENST00000323668 BAZ2BQ9UIF8 2168 aaKnown RBP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 POTEFA5A3E0 1075 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 RASGRF2O14827 1237 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 POTEIP0CG38 1075 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 ATF2P15336 505 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 PCK1P35558 622 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 XKR9Q5GH70 373 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 FIGNQ5HY92 759 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 POTEGQ6S5H5 508 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 POTEEQ6S8J3 1075 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 SH3RF1Q7Z6J0 888 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 CCDC13Q8IYE1 715 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 PI4KBQ9UBF8 816 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 DIS3Q9Y2L1 958 aaKnown RBP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 PLEKP08567 350 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 ARHGAP4P98171 946 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 GUCY1A3Q02108 690 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 LLGL1Q15334 1064 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 ADGRF4Q8IZF3 695 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 TCP11Q8WWU5 503 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 C1orf112Q9NSG2 853 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 SNX24Q9Y343 169 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 DLATP10515 647 aaKnown RBP15.98■□□□□ 0.15
TCOF1-201ENST00000323668 NLRP14Q86W24 1093 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 PPFIBP2Q8ND30 876 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 ECEL1O95672 775 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 IFNB1P01574 187 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 RASA1P20936 1047 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 SYDE2Q5VT97 1194 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 ADGRA1Q86SQ6 560 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 VGLL2Q8N8G2 317 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 NT5C1BQ96P26 610 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 PCIF1Q9H4Z3 704 aa15.98■□□□□ 0.15
TCOF1-201ENST00000323668 MAGOHP61326 146 aaKnown RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 HERVK_113P62684 666 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 CTTNQ14247 550 aaKnown RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 AOC3Q16853 763 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 C6orf118Q5T5N4 469 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 DAGLBQ8NCG7 672 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 PIGOQ8TEQ8 1089 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 FAM20AQ96MK3 541 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 POLD4Q9HCU8 107 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 ARHGAP23Q9P227 1491 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 GDF11O95390 407 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 KRT14P02533 472 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 HOXA13P31271 388 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms