RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 KDM1AO60341 852 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 DKC1O60832 514 aaKnown RBP eCLIP10.63□□□□□ -0.71
COL6A3-201ENST00000295550 RBM26Q5T8P6 1007 aaKnown RBP10.63□□□□□ -0.71
COL6A3-201ENST00000295550 TPH2Q8IWU9 490 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 KIAA2013Q8IYS2 634 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ENAHQ8N8S7 591 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-201ENST00000295550 EXOC1LA0A1B0GW35 172 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 PRPSAP1Q14558 356 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 SLMAPQ14BN4 828 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ALX1Q15699 326 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 NBPF9Q3BBW0 867 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 PIK3R5Q8WYR1 880 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 DISC1Q9NRI5 854 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 DAAM1Q9Y4D1 1078 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 XDHP47989 1333 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 PIK3CAP42336 1068 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 IQCB1Q15051 598 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 STRBPQ96SI9 672 aaKnown RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 EXOSC10Q01780 885 aaKnown RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 CFAP36Q96G28 342 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 CSRNP1Q96S65 589 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 MYH3P11055 1940 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 PYGLP06737 847 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 PTPREP23469 700 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ADCY1Q08828 1119 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 FAM26FQ5R3K3 315 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 MIS12Q9H081 205 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 HEXIM1O94992 359 aaKnown RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 BTDP43251 543 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 DMP1Q13316 513 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 OTUD6AQ7L8S5 288 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 FBXL13Q8NEE6 735 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ZSWIM5Q9P217 1185 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 SUCLA2Q9P2R7 463 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 MAPK13O15264 365 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 GAS7O60861 476 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 EPB41L5Q9HCM4 733 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ANGPTL3Q9Y5C1 460 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 PGRMC1O00264 195 aaKnown RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ENC1O14682 589 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 RASGRF2O14827 1237 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 PLS3P13797 630 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 SLCO1A2P46721 670 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 USPL1Q5W0Q7 1092 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 SH3GL3Q99963 347 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 IRAK4Q9NWZ3 460 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 KIF17Q9P2E2 1029 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 FAM8A1Q9UBU6 413 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 CHGBP05060 677 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 LRRC63Q05C16 580 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 GNPTABQ3T906 1256 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 TTLL11Q8NHH1 800 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ZNF148Q9UQR1 794 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 PCDHB13Q9Y5F0 798 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 FRMPD2Q68DX3 1309 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 A6NJR5 290 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 GCFC2P16383 781 aaKnown RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 NCF2P19878 526 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 NSFP46459 744 aaKnown RBP10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ADAM9Q13443 819 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 MCUQ8NE86 351 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 ABHD10Q9NUJ1 306 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 TBK1Q9UHD2 729 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 CEMIPQ8WUJ3 1361 aa10.62□□□□□ -0.71
COL6A3-201ENST00000295550 PRKAB2O43741 272 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 PSMD2Q13200 908 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 TRIML2Q8N7C3 387 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 H7C0C1 242 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 CFLARO15519 480 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ATP5OP48047 213 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 HADHQ16836 314 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 CC2D1AQ6P1N0 951 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 COL4A3BPQ9Y5P4 624 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 USP27XA6NNY8 438 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 GNL1P36915 607 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 POLR2FP61218 127 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 AIFM3Q96NN9 605 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 WARS2Q9UGM6 360 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ANAPC5Q9UJX4 755 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 TOM1O60784 492 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 DCTN3O75935 186 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 HNRNPCP07910 306 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 MRPL28Q13084 256 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ZBTB41Q5SVQ8 909 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 RUBCNQ92622 972 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 AZI2Q9H6S1 392 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 SMYD3Q9H7B4 428 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ASAP1Q9ULH1 1129 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 PCDHA12Q9UN75 941 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 MORC2Q9Y6X9 1032 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 CITO14578 2027 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 NOP14P78316 857 aaKnown RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 ARMCX5Q6P1M9 558 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 SCYL2Q6P3W7 929 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 KLC3Q6P597 504 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 KNDC1Q76NI1 1749 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 K7ENM7 598 aa10.61□□□□□ -0.71
COL6A3-201ENST00000295550 RABL6Q3YEC7 729 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-201ENST00000295550 GJC2Q5T442 439 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms