RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HNRNPLLQ8WVV9 542 aaKnown RBP22.13■■□□□ 1.13
VPS53-201ENST00000291074 TMEM39BQ9GZU3 492 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 CYP3A4P08684 503 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 MAGEA1P43355 309 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 FAM151AQ8WW52 585 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 GLIS2Q9BZE0 524 aaPredicted RBP22.13■■□□□ 1.13
VPS53-201ENST00000291074 ANO9A1A5B4 782 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 CETN3O15182 167 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 KIF20AO95235 890 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 TUBB4BP68371 445 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 LARGE2Q8N3Y3 721 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 CAGE1Q8TC20 777 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 RGPD3A6NKT7 1758 aaPredicted RBP22.12■■□□□ 1.13
VPS53-201ENST00000291074 RGPD4Q7Z3J3 1758 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 SFI1A8K8P3 1242 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 MAP2K7O14733 419 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 ARID5AQ03989 594 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 EDRF1Q3B7T1 1238 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 EPM2AIP1Q7L775 607 aaPredicted RBP22.12■■□□□ 1.13
VPS53-201ENST00000291074 EDEM3Q9BZQ6 932 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 GOPCQ9HD26 462 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 FBXO28Q9NVF7 368 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 RABGAP1Q9Y3P9 1069 aa22.12■■□□□ 1.13
VPS53-201ENST00000291074 RBBP6Q7Z6E9 1792 aaKnown RBP22.11■■□□□ 1.13
VPS53-201ENST00000291074 ZBTB39O15060 712 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 RASSF7Q02833 373 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 KCNA1Q09470 495 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 KCNH2Q12809 1159 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 ENOX2Q16206 610 aaKnown RBP22.11■■□□□ 1.13
VPS53-201ENST00000291074 KNOP1Q1ED39 458 aaKnown RBP22.11■■□□□ 1.13
VPS53-201ENST00000291074 SFMBT2Q5VUG0 894 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 TRIM58Q8NG06 486 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 GMLQ99445 158 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 IKZF4Q9H2S9 585 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 SCAF8Q9UPN6 1271 aaKnown RBP22.11■■□□□ 1.13
VPS53-201ENST00000291074 TACC1O75410 805 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 RXRBP28702 533 aa22.11■■□□□ 1.13
VPS53-201ENST00000291074 H3BQF6 201 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 ERLIN1O75477 346 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 EPS15P42566 896 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 USP14P54578 494 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 RAPGEF1Q13905 1077 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 PPP4R3CPQ6ZMV5 832 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 PSMB7Q99436 277 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 POLR3CQ9BUI4 534 aaPredicted RBP22.1■■□□□ 1.13
VPS53-201ENST00000291074 HDAC9Q9UKV0 1011 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 L1RE1Q9UN81 338 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 ACTN1P12814 892 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 MAPK8IP2Q13387 824 aaPredicted RBP22.1■■□□□ 1.13
VPS53-201ENST00000291074 SPDYE2Q495Y8 402 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 LRCH2Q5VUJ6 765 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 TPH2Q8IWU9 490 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 DYDC2Q96IM9 177 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 STK32BQ9NY57 414 aa22.1■■□□□ 1.13
VPS53-201ENST00000291074 GCNT3O95395 438 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 EYA4O95677 639 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 VIL1P09327 827 aaKnown RBP22.09■■□□□ 1.13
VPS53-201ENST00000291074 C2orf54Q08AI8 447 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 SLC9C1Q4G0N8 1177 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 OTOP1Q7RTM1 612 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 OGFOD1Q8N543 542 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 COG1Q8WTW3 980 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 SYNPO2Q9UMS6 1093 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 SNX12Q9UMY4 172 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 TRAF3IP3Q9Y228 551 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 JRKLQ9Y4A0 524 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 KIF13BQ9NQT8 1826 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 ASTN1O14525 1302 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 SSU72P8A0A1W2PR75 194 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 GCOM1H8Y6P7 765 aaPredicted RBP22.09■■□□□ 1.13
VPS53-201ENST00000291074 BUB1O43683 1085 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 TBCAO75347 108 aaKnown RBP22.09■■□□□ 1.13
VPS53-201ENST00000291074 POLR2MP0CAP2 368 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 CKAP4Q07065 602 aaKnown RBP22.09■■□□□ 1.13
VPS53-201ENST00000291074 TTLL6Q8N841 843 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 GANQ9H2C0 597 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 RANBP17Q9H2T7 1088 aaKnown RBP22.09■■□□□ 1.13
VPS53-201ENST00000291074 FAM184BQ9ULE4 1060 aa22.09■■□□□ 1.13
VPS53-201ENST00000291074 NCK2O43639 380 aa22.08■■□□□ 1.13
VPS53-201ENST00000291074 ZMYND10O75800 440 aa22.08■■□□□ 1.13
VPS53-201ENST00000291074 RINT1Q6NUQ1 792 aa22.08■■□□□ 1.13
VPS53-201ENST00000291074 FAM133AQ8N9E0 248 aa22.08■■□□□ 1.13
VPS53-201ENST00000291074 HSD17B14Q9BPX1 270 aa22.08■■□□□ 1.13
VPS53-201ENST00000291074 VCPKMTQ9H867 229 aa22.08■■□□□ 1.13
VPS53-201ENST00000291074 CLIC2O15247 247 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 PSMD10O75832 226 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 AKAP3O75969 853 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 SERPING1P05155 500 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 CXCR5P32302 372 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 CASP4P49662 377 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 NFRKBQ6P4R8 1299 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 HDXQ7Z353 690 aa22.08■■□□□ 1.12
VPS53-201ENST00000291074 ARMCX3Q9UH62 379 aaPredicted RBP22.08■■□□□ 1.12
VPS53-201ENST00000291074 SLITRK3O94933 977 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 SLC9A1P19634 815 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 DCAF17Q5H9S7 520 aaPredicted RBP22.07■■□□□ 1.12
VPS53-201ENST00000291074 PDE11AQ9HCR9 933 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 SMARCAL1Q9NZC9 954 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 PJA2O43164 708 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 WDR93Q6P2C0 686 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms