RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 SREK1Q8WXA9 508 aaKnown RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 NSUN4Q96CB9 384 aaKnown RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 CEP95Q96GE4 821 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 INTUQ9ULD6 942 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 SUFUQ9UMX1 484 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 I3L4J1 428 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 FCER1AP12319 257 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 ATF2P15336 505 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 DR1Q01658 176 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 GRM4Q14833 912 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 TBC1D10BQ4KMP7 808 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 LIN9Q5TKA1 542 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 MARCH10Q8NA82 808 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 CCDC110Q8TBZ0 833 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 JDP2Q8WYK2 163 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 PBKQ96KB5 322 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 RUNDC3BQ96NL0 473 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 BARHL2Q9NY43 387 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 SNX12Q9UMY4 172 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 hCG_1984214I3L0E3 225 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 KCNQ2O43526 872 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 KAZNQ674X7 775 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 PHLDB2Q86SQ0 1253 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 FAM186BQ8IYM0 893 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 ZNF713Q8N859 430 aaPredicted RBP12.52□□□□□ -0.4
VPS33A-201ENST00000267199 OR2W6PQ8NHA6 318 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 HPS3Q969F9 1004 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 VIPAS39Q9H9C1 493 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.52□□□□□ -0.4
VPS33A-201ENST00000267199 EHD2Q9NZN4 543 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 LIMA1Q9UHB6 759 aaKnown RBP12.52□□□□□ -0.4
VPS33A-201ENST00000267199 BBOX1O75936 387 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 GDF11O95390 407 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 POLR2MP0CAP2 368 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 PPP2R2AP63151 447 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 IL9RQ01113 521 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 CUL1Q13616 776 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 LRRC14Q15048 493 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 TMED2Q15363 201 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 DLGAP5Q15398 846 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 GLE1Q53GS7 698 aaKnown RBP12.52□□□□□ -0.4
VPS33A-201ENST00000267199 LARGE2Q8N3Y3 721 aa12.52□□□□□ -0.4
VPS33A-201ENST00000267199 ZNF473Q8WTR7 871 aaKnown RBP12.52□□□□□ -0.4
VPS33A-201ENST00000267199 PDHA1P08559 390 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 CASP7P55210 303 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 MAK16Q9BXY0 300 aaKnown RBP12.52□□□□□ -0.41
VPS33A-201ENST00000267199 HPSEQ9Y251 543 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 TARSL2A2RTX5 802 aaKnown RBP12.52□□□□□ -0.41
VPS33A-201ENST00000267199 WDR91A4D1P6 747 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 PRPF6O94906 941 aaKnown RBP12.52□□□□□ -0.41
VPS33A-201ENST00000267199 NCAPHQ15003 741 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 SAAL1Q96ER3 474 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 CD248Q9HCU0 757 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 FBXL5Q9UKA1 691 aa12.52□□□□□ -0.41
VPS33A-201ENST00000267199 PNMA6FA0A0J9YX94 578 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 RCN2Q14257 317 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 GNPTABQ3T906 1256 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 HNRNPLLQ8WVV9 542 aaKnown RBP12.51□□□□□ -0.41
VPS33A-201ENST00000267199 ZNF148Q9UQR1 794 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 TCP10L2B9ZVM9 353 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 RPS6KA4O75676 772 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 LSP1P33241 339 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 ZNF211Q13398 564 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-201ENST00000267199 MAP7D1Q3KQU3 841 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 BHMT2Q9H2M3 363 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 DBNDD1Q9H9R9 158 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 GCNT4Q9P109 453 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 NARFQ9UHQ1 456 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-201ENST00000267199 PPIP5K2O43314 1243 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 ALAS1P13196 640 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 TMOD1P28289 359 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 ANKRD40Q6AI12 368 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 CEP128Q6ZU80 1094 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 ILDR1Q86SU0 546 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-201ENST00000267199 FERMT1Q9BQL6 677 aa12.51□□□□□ -0.41
VPS33A-201ENST00000267199 A0A1W2PQC6 194 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L15C9J2P7 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L13C9JLJ4 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L11C9JVI0 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L18D6R9N7 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L22D6RA61 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L17D6RBQ6 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L19D6RCP7 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L20D6RJB6 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TDP2O95551 362 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TNNI1P19237 187 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 ELF1P32519 619 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 CARSP49589 748 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L24Q0WX57 530 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TRIM65Q6PJ69 517 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 USP17L6PQ6QN14 398 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PALM2Q8IXS6 379 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 ADSSL1Q8N142 457 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PDCD7Q8N8D1 485 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TRIM9Q9C026 710 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 CD209Q9NNX6 404 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PVALEFA0A1B0GWK0 134 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PHF20L1A8MW92 1017 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 E9PMD0 336 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms