RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 FTCDO95954 541 aa20.64■□□□□ 0.9
UPF1-201ENST00000262803 SLFNL1Q499Z3 407 aa20.64■□□□□ 0.9
UPF1-201ENST00000262803 THEM5Q8N1Q8 247 aa20.64■□□□□ 0.9
UPF1-201ENST00000262803 EPS15L1Q9UBC2 864 aa20.64■□□□□ 0.9
UPF1-201ENST00000262803 CLIC2O15247 247 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 RESP18Q5W5W9 173 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 CCDC124Q96CT7 223 aaKnown RBP20.64■□□□□ 0.89
UPF1-201ENST00000262803 SUN1O94901 812 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 MXI1P50539 228 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 KRT31Q15323 416 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 TAB3Q8N5C8 712 aaPredicted RBP20.64■□□□□ 0.89
UPF1-201ENST00000262803 C2orf69Q8N8R5 385 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 KRT1P04264 644 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 ANKRD20A4Q4UJ75 823 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 ANKRD20A8PQ5CZ79 823 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 ANKRD20A2Q5SQ80 823 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 ANKRD20A1Q5TYW2 823 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 MCPH1Q8NEM0 835 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 EMILIN3Q9NT22 766 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 INTS9Q9NV88 658 aaKnown RBP20.64■□□□□ 0.89
UPF1-201ENST00000262803 HOXC10Q9NYD6 342 aa20.64■□□□□ 0.89
UPF1-201ENST00000262803 PRPSAP2O60256 369 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 LRRN2O75325 713 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 TLK1Q9UKI8 766 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 SLC8A1P32418 973 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 IFNAR2P48551 515 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 SEMA3FQ13275 785 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 PLEKHA8P1O95397 391 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 DIXDC1Q155Q3 683 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 TCP11X2Q5H9J9 407 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 TTBK2Q6IQ55 1244 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 NDST4Q9H3R1 872 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 FEM1BQ9UK73 627 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 SHROOM2Q13796 1616 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 MEIS1O00470 390 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 RPS6KA4O75676 772 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 MECOMQ03112 1051 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 RAPH1Q70E73 1250 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 PSPC1Q8WXF1 523 aaKnown RBP20.63■□□□□ 0.89
UPF1-201ENST00000262803 PIGBQ92521 554 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 NUDCD1Q96RS6 583 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 KIF9Q9HAQ2 790 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 TOPORSQ9NS56 1045 aaPredicted RBP20.63■□□□□ 0.89
UPF1-201ENST00000262803 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.63■□□□□ 0.89
UPF1-201ENST00000262803 IPO5O00410 1097 aaKnown RBP20.63■□□□□ 0.89
UPF1-201ENST00000262803 DMTNQ08495 405 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 MUM1Q2TAK8 710 aa20.63■□□□□ 0.89
UPF1-201ENST00000262803 MFAP3LO75121 409 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 RYBPQ8N488 228 aaPredicted RBP20.62■□□□□ 0.89
UPF1-201ENST00000262803 ATP6V1E2Q96A05 226 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 EFHD1Q9BUP0 239 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 ZNF341Q9BYN7 854 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 SERPING1P05155 500 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 ACTN1P12814 892 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 FBXO38Q6PIJ6 1188 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 KSR1Q8IVT5 923 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 PIM2Q9P1W9 311 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 ORC6Q9Y5N6 252 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 PREX2Q70Z35 1606 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 HOXD10P28358 340 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 MAP2K2P36507 400 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 PDXDC2PQ6P474 469 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 DRC3Q9H069 523 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 RFX7Q2KHR2 1363 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 WDR19Q8NEZ3 1342 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 MSH2P43246 934 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 KYAT1Q16773 422 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 SGO2Q562F6 1265 aa20.62■□□□□ 0.89
UPF1-201ENST00000262803 CNOT10Q9H9A5 744 aaKnown RBP20.62■□□□□ 0.89
UPF1-201ENST00000262803 DNAJC8O75937 253 aaPredicted RBP20.61■□□□□ 0.89
UPF1-201ENST00000262803 GFPT2O94808 682 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 CLTAP09496 248 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 PLTPP55058 493 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 TFAMQ00059 246 aaKnown RBP20.61■□□□□ 0.89
UPF1-201ENST00000262803 APOBEC3FQ8IUX4 373 aaKnown RBP20.61■□□□□ 0.89
UPF1-201ENST00000262803 GCNT4Q9P109 453 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 ATP8A1Q9Y2Q0 1164 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 LUC7L3O95232 432 aaKnown RBP20.61■□□□□ 0.89
UPF1-201ENST00000262803 RHOT2Q8IXI1 618 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 ELMOD1Q8N336 334 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 TBC1D22BQ9NU19 505 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 PALLDQ8WX93 1383 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 SUSD4Q5VX71 490 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 GBP5Q96PP8 586 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 PCDHA13Q9Y5I0 950 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 CDC42BPGQ6DT37 1551 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 GDF11O95390 407 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 TBC1D10CQ8IV04 446 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 DBNDD1Q9H9R9 158 aa20.61■□□□□ 0.89
UPF1-201ENST00000262803 ABCB11O95342 1321 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 PLA2G4BP0C869 781 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 PAMP19021 973 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 MB21D1Q8N884 522 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 POC1B-GALNT4F8VUJ3 575 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 CHEK2O96017 543 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 IFT88Q13099 833 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 TBC1D10BQ4KMP7 808 aaPredicted RBP20.6■□□□□ 0.89
UPF1-201ENST00000262803 HSP90AA5PQ58FG0 334 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 KLC3Q6P597 504 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 DSTYKQ6XUX3 929 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms