RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 RAD51AP2Q09MP3 1159 aa16.52■□□□□ 0.24
CCDC47-201ENST00000225726 RINT1Q6NUQ1 792 aa16.52■□□□□ 0.24
CCDC47-201ENST00000225726 PIGOQ8TEQ8 1089 aa16.52■□□□□ 0.24
CCDC47-201ENST00000225726 RUSC1Q9BVN2 902 aa16.52■□□□□ 0.24
CCDC47-201ENST00000225726 SPATC1LQ9H0A9 340 aa16.52■□□□□ 0.24
CCDC47-201ENST00000225726 NRDCO43847 1150 aa16.52■□□□□ 0.23
CCDC47-201ENST00000225726 FGFR1OPO95684 399 aaKnown RBP16.52■□□□□ 0.23
CCDC47-201ENST00000225726 HERVK_113P62684 666 aa16.52■□□□□ 0.23
CCDC47-201ENST00000225726 DNERQ8NFT8 737 aa16.52■□□□□ 0.23
CCDC47-201ENST00000225726 WRAP73Q9P2S5 460 aaPredicted RBP16.52■□□□□ 0.23
CCDC47-201ENST00000225726 ITIH6Q6UXX5 1313 aa16.52■□□□□ 0.23
CCDC47-201ENST00000225726 LRRC41Q15345 812 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 PTPN21Q16825 1174 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 BANK1Q8NDB2 785 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 GLIS3Q8NEA6 775 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 IWS1Q96ST2 819 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 VPS16Q9H269 839 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 KCND2Q9NZV8 630 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 TCEAL9Q9UHQ7 104 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 OSBPP22059 807 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 JAK3P52333 1124 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 KRT76Q01546 638 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 C17orf53Q8N3J3 647 aaPredicted RBP16.51■□□□□ 0.23
CCDC47-201ENST00000225726 TBCAO75347 108 aaKnown RBP16.51■□□□□ 0.23
CCDC47-201ENST00000225726 CNMDO75829 334 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 GAP43P17677 238 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 C1orf186Q6ZWK4 172 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 ANKRD35Q8N283 1001 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 CCDC112Q8NEF3 446 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 CDHR1Q96JP9 859 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 ZHX3Q9H4I2 956 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 ZSWIM4Q9H7M6 989 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 TBC1D7Q9P0N9 293 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 COL4A3BPQ9Y5P4 624 aa16.51■□□□□ 0.23
CCDC47-201ENST00000225726 POTEJP0CG39 1038 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 SFNP31947 248 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 SNAPC2Q13487 334 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 RDM1Q8NG50 284 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 SLC10A4Q96EP9 437 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 CNOT6LQ96LI5 555 aaKnown RBP16.5■□□□□ 0.23
CCDC47-201ENST00000225726 LYPLA2O95372 231 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 COPB2P35606 906 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 GJA5P36382 358 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 MAP1SQ66K74 1059 aaPredicted RBP16.5■□□□□ 0.23
CCDC47-201ENST00000225726 SFR1Q86XK3 245 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 CREBRFQ8IUR6 639 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 SENP7Q9BQF6 1050 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 LGALS16A8MUM7 142 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 ATP9AO75110 1047 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 TPM2P07951 284 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 GPAT2Q6NUI2 795 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 FGFBP2Q9BYJ0 223 aa16.5■□□□□ 0.23
CCDC47-201ENST00000225726 KIAA1217Q5T5P2 1943 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 WDR64B1ANS9 1081 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 SLC25A27O95847 323 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 ZCWPW2Q504Y3 356 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.49■□□□□ 0.23
CCDC47-201ENST00000225726 PAGR1Q9BTK6 254 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 SAMM50Q9Y512 469 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 TRAF5O00463 557 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 QARSP47897 775 aaKnown RBP16.49■□□□□ 0.23
CCDC47-201ENST00000225726 GNPTABQ3T906 1256 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 ZNF746Q6NUN9 644 aaPredicted RBP16.49■□□□□ 0.23
CCDC47-201ENST00000225726 DBR1Q9UK59 544 aaKnown RBP16.49■□□□□ 0.23
CCDC47-201ENST00000225726 NFASCO94856 1347 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 ARHGEF35A5YM69 484 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 ZBTB39O15060 712 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 PEX10O60683 326 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 NCAPG2Q86XI2 1143 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 SCFD1Q8WVM8 642 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 TUBGCP2Q9BSJ2 902 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 MOV10L1Q9BXT6 1211 aaKnown RBP16.49■□□□□ 0.23
CCDC47-201ENST00000225726 TMX1Q9H3N1 280 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 ODF2LQ9ULJ1 636 aa16.49■□□□□ 0.23
CCDC47-201ENST00000225726 RGS20O76081 388 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 FAM13AO94988 1023 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 KCNJ6P48051 423 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 EPM2AIP1Q7L775 607 aaPredicted RBP16.48■□□□□ 0.23
CCDC47-201ENST00000225726 PPFIBP1Q86W92 1011 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 ZNF408Q9H9D4 720 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.48■□□□□ 0.237e-9■□□□□ 11.2
CCDC47-201ENST00000225726 RSPH10B2B2RC85 870 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 OFD1O75665 1012 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 CCNE2O96020 404 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 RSPH10BP0C881 870 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 KCNA2P16389 499 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 FKBP1BP68106 108 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 UBXN1Q04323 297 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 STXBP2Q15833 593 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.48■□□□□ 0.23
CCDC47-201ENST00000225726 LRRC55Q6ZSA7 311 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 OLFML3Q9NRN5 406 aa16.48■□□□□ 0.23
CCDC47-201ENST00000225726 GUCY2CP25092 1073 aa16.47■□□□□ 0.23
CCDC47-201ENST00000225726 MTIF2P46199 727 aaKnown RBP16.47■□□□□ 0.23
CCDC47-201ENST00000225726 ALDH5A1P51649 535 aaPredicted RBP16.47■□□□□ 0.23
CCDC47-201ENST00000225726 TRIM14Q14142 442 aa16.47■□□□□ 0.23
CCDC47-201ENST00000225726 PPP4R3CPQ6ZMV5 832 aa16.47■□□□□ 0.23
CCDC47-201ENST00000225726 TC2NQ8N9U0 490 aa16.47■□□□□ 0.23
CCDC47-201ENST00000225726 KCTD10Q9H3F6 313 aa16.47■□□□□ 0.23
CCDC47-201ENST00000225726 SEL1LQ9UBV2 794 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms