RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	SPR1	P32603	445 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	SEF1	P34228	1148 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	MCH2	P36032	473 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	DOA1	P36037	715 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	SHM1	P37292	490 aa	Predicted RBP	4.84	□□□□□ -1.63
SEC39	YLR440C	NAT2	P37293	288 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	LDH1	P38139	375 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	CKB2	P38930	258 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	PRP39	P39682	629 aa	Known RBP	4.84	□□□□□ -1.63
SEC39	YLR440C	RBG1	P39729	369 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	BUR6	P40096	142 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	SHR5	P41912	237 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	GDS1	P41913	522 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	RFX1	P48743	811 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	GET1	P53192	235 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	PEX13	P80667	386 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	ECM30	Q06673	1274 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	HRK1	Q08732	759 aa	Known RBP	4.84	□□□□□ -1.63
SEC39	YLR440C	TRE1	Q08919	783 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	RTK1	Q12100	620 aa	Predicted RBP	4.84	□□□□□ -1.63
SEC39	YLR440C	YOP1	Q12402	180 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	ZRT2	Q12436	422 aa		4.84	□□□□□ -1.63
SEC39	YLR440C	EFG1	Q3E705	233 aa	Known RBP	4.84	□□□□□ -1.63
SEC39	YLR440C	TDH2	P00358	332 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.64	not detected
SEC39	YLR440C	RPL24A	P04449	155 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	HVG1	P0CE11	249 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	GSY1	P23337	708 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	RNA14	P25298	677 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	VBA3	P25594	458 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	MCM5	P29496	775 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	SPS19	P32573	292 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	PTC1	P35182	281 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	UPS2	P35200	230 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	MSC7	P38694	644 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	SEO1	P39709	593 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	BDH1	P39714	382 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	YMR147W	P40218	223 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	OYE3	P41816	400 aa	Predicted RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	MRPS18	P42847	217 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	ARC1	P46672	376 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	EFM3	P47163	339 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	DIA3	P52290	468 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	ACS2	P52910	683 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	VPS62	P53285	467 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	YIP3	P53633	176 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	CAF40	P53829	373 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	HLR1	Q04429	423 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	PAL1	Q05518	499 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	TOS4	Q06266	489 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	HDA2	Q06629	674 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	YNG1	Q08465	219 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	LEA1	Q08963	238 aa	Predicted RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	GPM2	Q12008	311 aa		4.84	□□□□□ -1.64
SEC39	YLR440C	GET3	Q12154	354 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	YRA1	Q12159	226 aa	Known RBP	4.84	□□□□□ -1.64
SEC39	YLR440C	HTB1	P02293	131 aa	Known RBP	4.83	□□□□□ -1.64
SEC39	YLR440C	HTB2	P02294	131 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	SNF3	P10870	884 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	YPK1	P12688	680 aa	Known RBP	4.83	□□□□□ -1.64
SEC39	YLR440C	PPH22	P23595	377 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	ERG6	P25087	383 aa	Known RBP	4.83	□□□□□ -1.64
SEC39	YLR440C	PET18	P25362	215 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	SEC65	P29478	273 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	HBS1	P32769	611 aa	Known RBP	4.83	□□□□□ -1.64
SEC39	YLR440C	PDR3	P33200	976 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	JEN1	P36035	616 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	SKG1	P36169	355 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	DIA4	P38705	446 aa	Predicted RBP	4.83	□□□□□ -1.64
SEC39	YLR440C	SPL2	P38839	148 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	PSD1	P39006	500 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	AKR1	P39010	764 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	CFD1	P40558	293 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	IDP2	P41939	412 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	YJL163C	P46996	555 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	RSM27	P53305	110 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	TRM82	Q03774	444 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	RIM13	Q03792	727 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	CSM3	Q04659	317 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	BUR2	Q05949	395 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	FRA1	Q07825	749 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	YLR036C	Q07986	203 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	CRT10	Q08226	957 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	MCH5	Q08777	521 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	CTF3	Q12748	733 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	RGS2	Q99188	309 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	DFG16	Q99234	619 aa		4.83	□□□□□ -1.64
SEC39	YLR440C	NUC1	P08466	329 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	UGA1	P17649	471 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	PRE9	P23638	258 aa	Known RBP	4.82	□□□□□ -1.64
SEC39	YLR440C	YCR051W	P25631	222 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	SPT14	P32363	452 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	APT2	P36973	181 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	SFB3	P38810	929 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	PNT1	P38969	423 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	POG1	P40473	351 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	INP51	P40559	946 aa	Known RBP	4.82	□□□□□ -1.64
SEC39	YLR440C	OPT1	P40897	799 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	GSM1	P42950	618 aa		4.82	□□□□□ -1.64
SEC39	YLR440C	HIT1	P46973	164 aa		4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 21.7 ms