RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MYL7Q01449 175 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MAP3K10Q02779 954 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CAPRIN1Q14444 709 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 FAM133BQ5BKY9 247 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 OGFOD2Q6N063 350 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ZC3H14Q6PJT7 736 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 BCAS4Q8TDM0 211 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ADNPQ9H2P0 1102 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SUFUQ9UMX1 484 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 AQRO60306 1485 aaKnown RBP eCLIP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM191CA6NGB0 347 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 APOA1P02647 267 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM191BP0C7N4 346 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TCF3P15923 654 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ATP2B4P23634 1241 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SERPINB10P48595 397 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 UBASH3AP57075 661 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 RAB44Q7Z6P3 723 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ZC3H18Q86VM9 953 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MYRIPQ8NFW9 859 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ATL2Q8NHH9 583 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SLC20A1Q8WUM9 679 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SERPINI1Q99574 410 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 C10orf88Q9H8K7 445 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 UBN1Q9NPG3 1134 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HESX1Q9UBX0 185 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DBR1Q9UK59 544 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HEMK1Q9Y5R4 338 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DOCK3Q8IZD9 2030 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MAGEB6P1A0A0J9YX57 407 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MINDY4BA8MYZ0 360 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PRDM1O75626 825 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TNNC2P02585 160 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SUPT20HL2P0C7V6 817 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KRT15P19012 456 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 EEF1B2P24534 225 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 S100GP29377 79 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CAPZA2P47755 286 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 GTF2H3Q13889 308 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 IDI1Q13907 227 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 LRGUKQ96M69 825 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DCLK3Q9C098 648 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF229Q9UJW7 825 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 FER1L6Q2WGJ9 1857 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 BTBD18B2RXH4 712 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HIST1H2AGP0C0S8 130 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HIST1H2ADP20671 130 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 RASA1P20936 1047 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 USPL1Q5W0Q7 1092 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HIST2H2AA3Q6FI13 130 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KRT80Q6KB66 452 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CHMP1BQ7LBR1 199 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SUGP1Q8IWZ8 645 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ANKRD35Q8N283 1001 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TEX9Q8N6V9 391 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PHKBQ93100 1093 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PPP1R14AQ96A00 147 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 FAM212AQ96EL1 285 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 NT5C1AQ9BXI3 368 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KRT82Q9NSB4 513 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM51Q9NW97 253 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 POLIQ9UNA4 740 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 NCKAP1Q9Y2A7 1128 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 RRP15Q9Y3B9 282 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 BICRAQ9NZM4 1560 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HIVEP2P31629 2446 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MTCL1Q9Y4B5 1905 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DLX3O60479 287 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 STAG3L1P0CL83 205 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 FDX1P10109 184 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 EPHB1P54762 984 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 AP2B1P63010 937 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PDCLQ13371 301 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MTSS1LQ765P7 747 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ESR2Q92731 530 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 REXO5Q96IC2 774 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PPANQ9NQ55 473 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HELLSQ9NRZ9 838 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SAMSN1Q9NSI8 373 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DAB1O75553 588 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PSAPP07602 524 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MYL6BP14649 208 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KRT79Q5XKE5 535 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 NLRP9Q7RTR0 991 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 RASGEF1AQ8N9B8 481 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SAAL1Q96ER3 474 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 USP21Q9UK80 565 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 AP3B1O00203 1094 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PIK3R1P27986 724 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PLTPP55058 493 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PDE1BQ01064 536 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MMRN1Q13201 1228 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MFSD6Q6ZSS7 791 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KRT73Q86Y46 540 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SCUBE3Q8IX30 993 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CDKL2Q92772 493 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF653Q96CK0 615 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 NAPGQ99747 312 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MBD2Q9UBB5 411 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms