RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ATG2AQ2TAZ0 1938 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 ADGRA3Q8IWK6 1321 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 GRM6O15303 877 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 CYTH3O43739 400 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 IBSPP21815 317 aaPredicted RBP17.32■□□□□ 0.36
SYNE2-228ENST00000639659 NUCB1Q02818 461 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 RUFY4Q6ZNE9 571 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 CUL5Q93034 780 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 INPP4AQ96PE3 977 aaPredicted RBP17.32■□□□□ 0.36
SYNE2-228ENST00000639659 C11orf84Q9BUA3 381 aaPredicted RBP17.32■□□□□ 0.36
SYNE2-228ENST00000639659 RIOX1Q9H6W3 641 aa17.32■□□□□ 0.36
SYNE2-228ENST00000639659 SPATA31C2B4DYI2 1134 aa17.31■□□□□ 0.36
SYNE2-228ENST00000639659 IGHDP01880 384 aa17.31■□□□□ 0.36
SYNE2-228ENST00000639659 BTG3Q14201 252 aaPredicted RBP17.31■□□□□ 0.36
SYNE2-228ENST00000639659 USP17L6PQ6QN14 398 aa17.31■□□□□ 0.36
SYNE2-228ENST00000639659 COL4A6Q14031 1691 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 STAM2O75886 525 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 CHRNA1P02708 482 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 ICAM3P32942 547 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 GTF2F1P35269 517 aaKnown RBP eCLIP17.3■□□□□ 0.36
SYNE2-228ENST00000639659 TCF7P36402 384 aaPredicted RBP17.3■□□□□ 0.36
SYNE2-228ENST00000639659 IGBP1P78318 339 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 PPFIA1Q13136 1202 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 SART3Q15020 963 aaKnown RBP17.3■□□□□ 0.36
SYNE2-228ENST00000639659 CATIPQ7Z7H3 387 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 NLRX1Q86UT6 975 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 ADHFE1Q8IWW8 467 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 MYL10Q9BUA6 226 aa17.3■□□□□ 0.36
SYNE2-228ENST00000639659 FRMPD4Q14CM0 1322 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 NRCAMQ92823 1304 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 IRS1P35568 1242 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 BMPR1AP36894 532 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 MRE11P49959 708 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 DLX2Q07687 328 aaPredicted RBP17.29■□□□□ 0.36
SYNE2-228ENST00000639659 HYAL1Q12794 435 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 LPIN1Q14693 890 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 FAM26DQ5JW98 314 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 RSPH3Q86UC2 560 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 DNAJB3Q8WWF6 145 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 GLG1Q92896 1179 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 FAM49AQ9H0Q0 323 aaPredicted RBP17.29■□□□□ 0.36
SYNE2-228ENST00000639659 ALG13Q9NP73 1137 aaKnown RBP17.29■□□□□ 0.36
SYNE2-228ENST00000639659 PRKAG3Q9UGI9 489 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 MUTYHQ9UIF7 546 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 RWDD3Q9Y3V2 267 aa17.29■□□□□ 0.36
SYNE2-228ENST00000639659 U3KPZ7 1027 aaPredicted RBP17.29■□□□□ 0.36
SYNE2-228ENST00000639659 LINC01565O15544 149 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 CYP21A2P08686 494 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 LTBRP36941 435 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 NDUFV1P49821 464 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 GRIK4Q16099 956 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 PAN2Q504Q3 1202 aaKnown RBP17.28■□□□□ 0.36
SYNE2-228ENST00000639659 TAF2Q6P1X5 1199 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 ZBTB10Q96DT7 871 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 RRP36Q96EU6 259 aaKnown RBP17.28■□□□□ 0.36
SYNE2-228ENST00000639659 FBXL18Q96ME1 805 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 UPF3BQ9BZI7 483 aaKnown RBP17.28■□□□□ 0.36
SYNE2-228ENST00000639659 LMAN2LQ9H0V9 348 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 SEC63Q9UGP8 760 aaKnown RBP17.28■□□□□ 0.36
SYNE2-228ENST00000639659 TUBE1Q9UJT0 475 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 CDY2AQ9Y6F7 541 aa17.28■□□□□ 0.36
SYNE2-228ENST00000639659 C5orf42Q9H799 3197 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 MBTPS2O43462 519 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 NCK2O43639 380 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 TBX10O75333 385 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 RB1P06400 928 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 ADAM17P78536 824 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 NHLH1Q02575 133 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 PTH1RQ03431 593 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 TROAPQ12815 778 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 PCNX4Q63HM2 1172 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 HFE2Q6ZVN8 426 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 NCOA7Q8NI08 942 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 CTCFLQ8NI51 663 aaPredicted RBP17.27■□□□□ 0.36
SYNE2-228ENST00000639659 POP1Q99575 1024 aaKnown RBP17.27■□□□□ 0.36
SYNE2-228ENST00000639659 TAF6LQ9Y6J9 622 aa17.27■□□□□ 0.36
SYNE2-228ENST00000639659 E7EWF7 191 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 C5orf67F2Z3F1 127 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 STXBP3O00186 592 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 ENPP3O14638 875 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 CD52P31358 61 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 MGAT3Q09327 533 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 TMEM62Q0P6H9 643 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 GIMAP8Q8ND71 665 aaPredicted RBP17.26■□□□□ 0.35
SYNE2-228ENST00000639659 CD207Q9UJ71 328 aa17.26■□□□□ 0.35
SYNE2-228ENST00000639659 POTEB3A0JP26 581 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 C19orf67A6NJJ6 358 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 ATP9AO75110 1047 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 MMP1P03956 469 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 LINC00271P0C7V0 271 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 SMAD4Q13485 552 aaKnown RBP17.25■□□□□ 0.35
SYNE2-228ENST00000639659 COL19A1Q14993 1142 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 SMAD2Q15796 467 aaKnown RBP17.25■□□□□ 0.35
SYNE2-228ENST00000639659 FBXO47Q5MNV8 452 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 POTEBQ6S5H4 581 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 NFXL1Q6ZNB6 911 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 TSHZ1Q6ZSZ6 1077 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 EXOC6Q8TAG9 804 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 RUFY2Q8WXA3 655 aa17.25■□□□□ 0.35
SYNE2-228ENST00000639659 SEPT1Q8WYJ6 367 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms