RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 LMBR1Q8WVP7 490 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SELENOOQ9BVL4 669 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 TRIM34Q9BYJ4 488 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 EPC1Q9H2F5 836 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 YY1AP1Q9H869 796 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MAPK8IP1Q9UQF2 711 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 KDM3AQ9Y4C1 1321 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 CAPN8A6NHC0 703 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 H0YHG0 523 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 PPIP5K2O43314 1243 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MSCO60682 206 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 GJB1P08034 283 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 EVX2Q03828 476 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SF3B3Q15393 1217 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MEA1Q16626 185 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SLC35G1Q2M3R5 365 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 CFAP58Q5T655 872 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 NCAPH2Q6IBW4 605 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 ADGRA1Q86SQ6 560 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 REXO1Q8N1G1 1221 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MMGT1Q8N4V1 131 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SRBD1Q8N5C6 995 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 RNF10Q8N5U6 811 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 ARHGEF1Q92888 912 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 ERGIC2Q96RQ1 377 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 PNKPQ96T60 521 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 C7orf25Q9BPX7 421 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 RIOK1Q9BRS2 568 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 IRX2Q9BZI1 471 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 GDAQ9Y2T3 454 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 BPTFQ12830 3046 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 A0A087WUV0 522 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 LOC102724159A0A0B4J2E5 919 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FAM205CA6NFA0 338 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CCNT1O60563 726 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 NTSR2O95665 410 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SMARCA1P28370 1054 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ARHGAP25P42331 645 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FCGRTP55899 365 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 RPS8P62241 208 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 DYNLL1P63167 89 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 PWP2Q15269 919 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 INF2Q27J81 1249 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 LETM2Q2VYF4 491 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FAM47AQ5JRC9 791 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SND1Q7KZF4 910 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC65Q8IXS2 484 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 TDHQ8IZJ6 230 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 DCP1AQ9NPI6 582 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 BARHL2Q9NY43 387 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GPRC5DQ9NZD1 345 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 LRWD1Q9UFC0 647 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 STX8Q9UNK0 236 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 MROH7Q68CQ1 1323 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 H3BQF6 201 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 RNF225M0QZC1 329 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FOXD2O60548 495 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CAMTA2O94983 1202 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ABL1P00519 1130 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 HTRA3P83110 453 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 RASSF7Q02833 373 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 MECOMQ03112 1051 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CLUL1Q15846 466 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 IL17AQ16552 155 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 COBLL1Q53SF7 1204 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 C10orf76Q5T2E6 689 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 UNC13DQ70J99 1090 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 MAFAQ8NHW3 353 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ERMNQ8TAM6 284 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ANKS1AQ92625 1134 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SPZ1Q9BXG8 430 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CAPS2Q9BXY5 557 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 NT5C3AQ9H0P0 336 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SEMA4AQ9H3S1 761 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 KBTBD4Q9NVX7 518 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 TMOD2Q9NZR1 351 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 HPCAL4Q9UM19 191 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SNX12Q9UMY4 172 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SLX4Q8IY92 1834 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GOLGA6L7A0A1B0GV03 622 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GRID2IPA4D2P6 1211 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 WTIPA6NIX2 430 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 PLCG1P19174 1290 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CASP1P29466 404 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ADCY7P51828 1080 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SMAD3P84022 425 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 AMPD2Q01433 879 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CALCRLQ16602 461 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SFMBT2Q5VUG0 894 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FOXR2Q6PJQ5 311 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 TSHZ1Q6ZSZ6 1077 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GUF1Q8N442 669 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 LRRC45Q96CN5 670 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FEZ2Q9UHY8 353 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 PCDHA13Q9Y5I0 950 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 TRPM7Q96QT4 1865 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SSU72P8A0A1W2PR75 194 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 SMCO2A6NFE2 343 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms