RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PITPNM2Q9BZ72 1349 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 TRAF5O00463 557 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 FLOT1O75955 427 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 ALAS1P13196 640 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 FKBP15Q5T1M5 1219 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 PIGOQ8TEQ8 1089 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 TTYH3Q9C0H2 523 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 EMILIN3Q9NT22 766 aa17.35■□□□□ 0.37
CLN3-251ENST00000636853 GAS7O60861 476 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 SLU7O95391 586 aaKnown RBP17.34■□□□□ 0.37
CLN3-251ENST00000636853 VCAM1P19320 739 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 HSD17B4P51659 736 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 CASP5P51878 434 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 TPH2Q8IWU9 490 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 DYDC2Q96IM9 177 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 ERGIC2Q96RQ1 377 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 DNAJC7Q99615 494 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 ZNF577Q9BSK1 485 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 NDST4Q9H3R1 872 aa17.34■□□□□ 0.37
CLN3-251ENST00000636853 RSPH10B2B2RC85 870 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 URI1O94763 535 aaPredicted RBP17.33■□□□□ 0.37
CLN3-251ENST00000636853 SLITRK3O94933 977 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 RSPH10BP0C881 870 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 FKBP3Q00688 224 aaKnown RBP17.33■□□□□ 0.37
CLN3-251ENST00000636853 SPP2Q13103 211 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 PPP2R5CQ13362 524 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 MAN2A1Q16706 1144 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 ANGEL2Q5VTE6 544 aaKnown RBP17.33■□□□□ 0.37
CLN3-251ENST00000636853 ZKSCAN4Q969J2 545 aaPredicted RBP17.33■□□□□ 0.37
CLN3-251ENST00000636853 HSD17B14Q9BPX1 270 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 NUP58Q9BVL2 599 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 RUSC1Q9BVN2 902 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 BCAS3Q9H6U6 928 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 RABGAP1Q9Y3P9 1069 aa17.33■□□□□ 0.37
CLN3-251ENST00000636853 ZBTB39O15060 712 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 CASQ1P31415 396 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 MUM1L1Q5H9M0 696 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 WDR59Q6PJI9 974 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 SFR1Q86XK3 245 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 LRRN4CLQ8ND94 238 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 KCTD10Q9H3F6 313 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 RPAP3Q9H6T3 665 aaPredicted RBP17.33■□□□□ 0.36
CLN3-251ENST00000636853 SLC38A10Q9HBR0 1119 aa17.33■□□□□ 0.36
CLN3-251ENST00000636853 EYA4O95677 639 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 TSR1Q2NL82 804 aaKnown RBP17.32■□□□□ 0.36
CLN3-251ENST00000636853 FOXR2Q6PJQ5 311 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 PDCL2Q8N4E4 241 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 IL31RAQ8NI17 732 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 TRPM4Q8TD43 1214 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 UNC45AQ9H3U1 944 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 PKD2L1Q9P0L9 805 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 ABL1P00519 1130 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 RETREG2Q8NC44 543 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 WRNIP1Q96S55 665 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 MXRA8Q9BRK3 442 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 TUFT1Q9NNX1 390 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 GINM1Q9NU53 330 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 PPP1R9AQ9ULJ8 1098 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 COL4A3BPQ9Y5P4 624 aa17.32■□□□□ 0.36
CLN3-251ENST00000636853 EPN1Q9Y6I3 576 aaPredicted RBP17.32■□□□□ 0.36
CLN3-251ENST00000636853 RBBP6Q7Z6E9 1792 aaKnown RBP17.31■□□□□ 0.36
CLN3-251ENST00000636853 DDX39AO00148 427 aaKnown RBP17.31■□□□□ 0.36
CLN3-251ENST00000636853 IPO5O00410 1097 aaKnown RBP17.31■□□□□ 0.36
CLN3-251ENST00000636853 ITGB5P18084 799 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 CCDC40Q4G0X9 1142 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 DCAF15Q66K64 600 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 ERO1AQ96HE7 468 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 SIK3Q9Y2K2 1263 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 SFI1A8K8P3 1242 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 EPHB6O15197 1021 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 SETQ01105 290 aaPredicted RBP17.31■□□□□ 0.36
CLN3-251ENST00000636853 RINT1Q6NUQ1 792 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 SCYL3Q8IZE3 742 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 CCDC155Q8N6L0 562 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 WNK4Q96J92 1243 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 WDR11Q9BZH6 1224 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 FAM207AQ9NSI2 230 aaPredicted RBP17.31■□□□□ 0.36
CLN3-251ENST00000636853 WRAP73Q9P2S5 460 aaPredicted RBP17.31■□□□□ 0.36
CLN3-251ENST00000636853 DOCK1Q14185 1865 aa17.31■□□□□ 0.36
CLN3-251ENST00000636853 NDUFA10O95299 355 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 MYBP10242 640 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 ZBED6P86452 979 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 MCF2L2Q86YR7 1114 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 TEKT3Q9BXF9 490 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 MMRN2Q9H8L6 949 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 REXO2Q9Y3B8 237 aaKnown RBP17.3■□□□□ 0.36
CLN3-251ENST00000636853 CTDP1Q9Y5B0 961 aaPredicted RBP17.3■□□□□ 0.36
CLN3-251ENST00000636853 RPTORQ8N122 1335 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 PRPF6O94906 941 aaKnown RBP17.3■□□□□ 0.36
CLN3-251ENST00000636853 ARHGAP29Q52LW3 1261 aa17.3■□□□□ 0.36
CLN3-251ENST00000636853 SYTL5Q8TDW5 730 aaPredicted RBP17.3■□□□□ 0.36
CLN3-251ENST00000636853 TBCAO75347 108 aaKnown RBP17.29■□□□□ 0.36
CLN3-251ENST00000636853 HOXD13P35453 343 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 USP14P54578 494 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 BACE1P56817 501 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 MEA1Q16626 185 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 FIGNQ5HY92 759 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 SMCR8Q8TEV9 937 aaPredicted RBP17.29■□□□□ 0.36
CLN3-251ENST00000636853 ATG4CQ96DT6 458 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 CEP63Q96MT8 703 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms