RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 UNC45AQ9H3U1 944 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 SERTAD1Q9UHV2 236 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 SYNGAP1Q96PV0 1343 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 TNPO2O14787 897 aaKnown RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 TRPA1O75762 1119 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 IGHA2P01877 340 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 MUTP22033 750 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 GTF2F1P35269 517 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-242ENST00000635958 FCGRTP55899 365 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 MDM2Q00987 491 aaPredicted RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 SP2Q02086 613 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 NOLC1Q14978 699 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-242ENST00000635958 EPHA7Q15375 998 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 TMEM119Q4V9L6 283 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 RRAGBQ5VZM2 374 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 HAUS3Q68CZ6 603 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 NCAPH2Q6IBW4 605 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 PDXDC2PQ6P474 469 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 SEPT14Q6ZU15 432 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 SH3RF1Q7Z6J0 888 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 CNNM3Q8NE01 707 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 DHX58Q96C10 678 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 TINF2Q9BSI4 451 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 CUEDC2Q9H467 287 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 MCM3APO60318 1980 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 KDM3AQ9Y4C1 1321 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 RBM47A0AV96 593 aaKnown RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 SNAI1O95863 264 aaPredicted RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 SPATA31C1P0DKV0 1188 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 KRT76Q01546 638 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 SP3Q02447 781 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 IRF5Q13568 498 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 CAMK4Q16566 473 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 ZNF746Q6NUN9 644 aaPredicted RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 CCDC62Q6P9F0 684 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 GIMAP8Q8ND71 665 aaPredicted RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 RDM1Q8NG50 284 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 EIF2AK1Q9BQI3 630 aaKnown RBP15.84■□□□□ 0.13
CLN3-242ENST00000635958 KATNBL1Q9H079 304 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 NT5C3AQ9H0P0 336 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 VTA1Q9NP79 307 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 SAGE1Q9NXZ1 904 aa15.84■□□□□ 0.13
CLN3-242ENST00000635958 MGAMO43451 1857 aa15.83■□□□□ 0.13
CLN3-242ENST00000635958 PLCG1P19174 1290 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 SFNP31947 248 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 CCT6AP40227 531 aaKnown RBP15.83■□□□□ 0.12
CLN3-242ENST00000635958 RGS2P41220 211 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 STAT6P42226 847 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 PSMC4P43686 418 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 ECM1Q16610 540 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 CATSPER3Q86XQ3 398 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 LRRC15Q8TF66 581 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 CCDC34Q96HJ3 373 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 TRIM47Q96LD4 638 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 MAGEF1Q9HAY2 307 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 TUFT1Q9NNX1 390 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.83■□□□□ 0.12
CLN3-242ENST00000635958 PKD2L1Q9P0L9 805 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 STK17AQ9UEE5 414 aa15.83■□□□□ 0.12
CLN3-242ENST00000635958 DDX41Q9UJV9 622 aaKnown RBP15.83■□□□□ 0.12
CLN3-242ENST00000635958 MED24O75448 989 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 SLITRK3O94933 977 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 CCNE2O96020 404 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 XRCC5P13010 732 aaKnown RBP15.82■□□□□ 0.12
CLN3-242ENST00000635958 JAK3P52333 1124 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 NEDD9Q14511 834 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 DNTTIP2Q5QJE6 756 aaKnown RBP15.82■□□□□ 0.12
CLN3-242ENST00000635958 OLFML2BQ68BL8 750 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 TAPT1Q6NXT6 567 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 CEP57L1Q8IYX8 460 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 NEK9Q8TD19 979 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 KBTBD4Q9NVX7 518 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 EEPD1Q7L9B9 569 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 MIER3Q7Z3K6 550 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 SMAP1Q8IYB5 467 aaPredicted RBP15.82■□□□□ 0.12
CLN3-242ENST00000635958 RASSF8Q8NHQ8 419 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 SCFD2Q8WU76 684 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 PAGE5Q96GU1 130 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 CDK5RAP3Q96JB5 506 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 APBA2Q99767 749 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 ABHD16BQ9H3Z7 469 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 BCAS3Q9H6U6 928 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 BLOC1S4Q9NUP1 217 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 SLC9A2Q9UBY0 812 aa15.82■□□□□ 0.12
CLN3-242ENST00000635958 HOOK1Q9UJC3 728 aaKnown RBP15.82■□□□□ 0.12
CLN3-242ENST00000635958 WDR64B1ANS9 1081 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 DDX39AO00148 427 aaKnown RBP15.81■□□□□ 0.12
CLN3-242ENST00000635958 CHMP2AO43633 222 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 UBA1P22314 1058 aaKnown RBP15.81■□□□□ 0.12
CLN3-242ENST00000635958 FBXO16Q8IX29 292 aaPredicted RBP15.81■□□□□ 0.12
CLN3-242ENST00000635958 FAM200AQ8TCP9 573 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 PLIN2Q99541 437 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 MTRQ99707 1265 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 ARHGAP39Q9C0H5 1083 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 JPH1Q9HDC5 661 aaPredicted RBP15.81■□□□□ 0.12
CLN3-242ENST00000635958 KIAA1468Q9P260 1216 aa15.81■□□□□ 0.12
CLN3-242ENST00000635958 POTEB3A0JP26 581 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 GPR25O00155 361 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 ATG7O95352 703 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 ARIH2O95376 493 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms