RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 FAHP16930 419 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 TUSC3Q13454 348 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 SKIDA1Q1XH10 827 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 PAN2Q504Q3 1202 aaKnown RBP5.34□□□□□ -1.55
SCN1A-211ENST00000635893 SPDYAQ5MJ70 313 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 PHF19Q5T6S3 580 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 USP53Q70EK8 1073 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 UHMK1Q8TAS1 419 aaKnown RBP5.34□□□□□ -1.55
SCN1A-211ENST00000635893 PPARGC1AQ9UBK2 798 aaKnown RBP5.34□□□□□ -1.55
SCN1A-211ENST00000635893 ZFP69BQ9UJL9 534 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 SLC4A7Q9Y6M7 1214 aa5.34□□□□□ -1.55
SCN1A-211ENST00000635893 ENO2P09104 434 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-211ENST00000635893 CSF2RBP32927 897 aa5.33□□□□□ -1.56
SCN1A-211ENST00000635893 SPIRE1Q08AE8 756 aa5.33□□□□□ -1.56
SCN1A-211ENST00000635893 GNL2Q13823 731 aaKnown RBP5.33□□□□□ -1.56
SCN1A-211ENST00000635893 HS1BP3Q53T59 392 aa5.33□□□□□ -1.56
SCN1A-211ENST00000635893 REXO1L1PQ8IX06 675 aa5.33□□□□□ -1.56
SCN1A-211ENST00000635893 RBM12BQ8IXT5 1001 aaKnown RBP5.33□□□□□ -1.56
SCN1A-211ENST00000635893 DCAF4Q8WV16 495 aa5.33□□□□□ -1.56
SCN1A-211ENST00000635893 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.33□□□□□ -1.56
SCN1A-211ENST00000635893 ARHGAP20Q9P2F6 1191 aa5.33□□□□□ -1.56
SCN1A-211ENST00000635893 GNAT1P11488 350 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 COL6A2P12110 1019 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 GRK2P25098 689 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 ERCC5P28715 1186 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-211ENST00000635893 GRK3P35626 688 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 GLRBP48167 497 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 PFKPQ01813 784 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 HSP90AA2PQ14568 343 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-211ENST00000635893 KIZQ2M2Z5 673 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 CD276Q5ZPR3 534 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 TCTN3Q6NUS6 607 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 LBX2Q6XYB7 198 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 IFNL2Q8IZJ0 200 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 STPG3Q8N7X2 389 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 SGSM3Q96HU1 749 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 GNRHR2Q96P88 292 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 LMF1Q96S06 567 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 KATNBL1Q9H079 304 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 PCED1AQ9H1Q7 454 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 ZNF408Q9H9D4 720 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 KCND1Q9NSA2 647 aa5.32□□□□□ -1.56
SCN1A-211ENST00000635893 LTFP02788 710 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 FGRP09769 529 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 HABP4Q5JVS0 413 aaKnown RBP5.31□□□□□ -1.56
SCN1A-211ENST00000635893 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-211ENST00000635893 LRRC37BQ96QE4 947 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 KCNJ15Q99712 375 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 ZFYVE21Q9BQ24 234 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 MENTQ9BUN1 341 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 SLITRK6Q9H5Y7 841 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 DSEQ9UL01 958 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 R3HCC1Q9Y3T6 440 aaKnown RBP5.31□□□□□ -1.56
SCN1A-211ENST00000635893 HS3ST3A1Q9Y663 406 aa5.31□□□□□ -1.56
SCN1A-211ENST00000635893 IQCA1LA6NCM1 817 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 ZNF839A8K0R7 811 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 H0Y858 1186 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 OVOL3O00110 214 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 FOXS1O43638 330 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 EPHA5P54756 1037 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 PRKD1Q15139 912 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-211ENST00000635893 GPR155Q7Z3F1 870 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 GIMAP8Q8ND71 665 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-211ENST00000635893 AARSD1Q9BTE6 412 aaKnown RBP5.3□□□□□ -1.56
SCN1A-211ENST00000635893 TELO2Q9Y4R8 837 aa5.3□□□□□ -1.56
SCN1A-211ENST00000635893 NKRFO15226 690 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-211ENST00000635893 IL18BPO95998 194 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 FGFR1P11362 822 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 GPR85P60893 370 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 ARID5AQ03989 594 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 USP10Q14694 798 aaKnown RBP5.29□□□□□ -1.56
SCN1A-211ENST00000635893 ZNF568Q3ZCX4 644 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 KCNT2Q6UVM3 1135 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 KCTD1Q719H9 257 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 IFNL3Q8IZI9 196 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-211ENST00000635893 ADOQ96SZ5 270 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 CARD11Q9BXL7 1154 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 ZNF341Q9BYN7 854 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 ST7Q9NRC1 585 aa5.29□□□□□ -1.56
SCN1A-211ENST00000635893 ZFR2Q9UPR6 939 aaKnown RBP5.29□□□□□ -1.56
SCN1A-211ENST00000635893 FAM47E-STBD1D6RA91 191 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 ACOT7O00154 380 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 PRODHO43272 600 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 SOD2P04179 222 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 KLF10Q13118 480 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 DDR2Q16832 855 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 STYK1Q6J9G0 422 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 TAX1BP1Q86VP1 789 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 CELF2-AS1Q8N7Q2 184 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 OSBP2Q969R2 916 aa5.28□□□□□ -1.56
SCN1A-211ENST00000635893 NEIL1Q96FI4 390 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-211ENST00000635893 TACO1Q9BSH4 297 aaKnown RBP5.28□□□□□ -1.56
SCN1A-211ENST00000635893 CUTAO60888 179 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 ZNF888P0CJ79 500 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-211ENST00000635893 PABPC1P11940 636 aaKnown RBP5.27□□□□□ -1.57
SCN1A-211ENST00000635893 COMTP21964 271 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 POLD1P28340 1107 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 RAC3P60763 192 aa5.27□□□□□ -1.57
SCN1A-211ENST00000635893 FOXE3Q13461 319 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms