RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CYP3A7P24462 503 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 BMP8BP34820 402 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 NEK8Q86SG6 692 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 HDAC6Q9UBN7 1215 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 EDIL3O43854 480 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 ACTR2P61160 394 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 Q4G0T1 1027 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 DIS3L2Q8IYB7 885 aaKnown RBP23.48■■□□□ 1.35
CLN3-240ENST00000631023 PPP1R13LQ8WUF5 828 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 LENG9Q96B70 501 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 NAP1L4Q99733 375 aaKnown RBP23.48■■□□□ 1.35
CLN3-240ENST00000631023 SMARCAD1Q9H4L7 1026 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 TELO2Q9Y4R8 837 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 NR5A1Q13285 461 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 PTGISQ16647 500 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 LETM2Q2VYF4 491 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 GLG1Q92896 1179 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 BADQ92934 168 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 UBE2OQ9C0C9 1292 aaKnown RBP23.47■■□□□ 1.35
CLN3-240ENST00000631023 HIPK3Q9H422 1215 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 AZI2Q9H6S1 392 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 GTF2IRD1Q9UHL9 959 aa23.47■■□□□ 1.35
CLN3-240ENST00000631023 BTBD18B2RXH4 712 aa23.46■■□□□ 1.35
CLN3-240ENST00000631023 DDX39AO00148 427 aaKnown RBP23.46■■□□□ 1.35
CLN3-240ENST00000631023 DHX15O43143 795 aaKnown RBP23.46■■□□□ 1.35
CLN3-240ENST00000631023 GCFC2P16383 781 aaKnown RBP23.46■■□□□ 1.35
CLN3-240ENST00000631023 GDF6Q6KF10 455 aaPredicted RBP23.46■■□□□ 1.35
CLN3-240ENST00000631023 ERAP1Q9NZ08 941 aa23.46■■□□□ 1.35
CLN3-240ENST00000631023 MSH4O15457 936 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 TDP2O95551 362 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 ITGB8P26012 769 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 GUCY1B3Q02153 619 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 PPP4R3AQ6IN85 833 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 TRIM50Q86XT4 487 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 FBXO18Q8NFZ0 1043 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 MBOAT7Q96N66 472 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 UIMC1Q96RL1 719 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 PPP1R12CQ9BZL4 782 aa23.45■■□□□ 1.34
CLN3-240ENST00000631023 DDX25Q9UHL0 483 aaKnown RBP23.45■■□□□ 1.34
CLN3-240ENST00000631023 ATG7O95352 703 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 GNAT1P11488 350 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 KRT76Q01546 638 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 MFSD5Q6N075 450 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 ZNF746Q6NUN9 644 aaPredicted RBP23.44■■□□□ 1.34
CLN3-240ENST00000631023 TMEM199Q8N511 208 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 TNFRSF25Q93038 417 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 RIT2Q99578 217 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 PRO3102Q9H379 93 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.44■■□□□ 1.34
CLN3-240ENST00000631023 EMSYQ7Z589 1322 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 CCNT1O60563 726 aaKnown RBP23.44■■□□□ 1.34
CLN3-240ENST00000631023 GAS7O60861 476 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 LGR5O75473 907 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 CYP2C9P11712 490 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 MIS18BP1Q6P0N0 1132 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 SMAP1Q8IYB5 467 aaPredicted RBP23.44■■□□□ 1.34
CLN3-240ENST00000631023 SLC5A5Q92911 643 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 TNPO1Q92973 898 aaKnown RBP23.44■■□□□ 1.34
CLN3-240ENST00000631023 NOC4LQ9BVI4 516 aaKnown RBP23.44■■□□□ 1.34
CLN3-240ENST00000631023 PCDH10Q9P2E7 1040 aa23.44■■□□□ 1.34
CLN3-240ENST00000631023 RANBP2P49792 3224 aaKnown RBP23.43■■□□□ 1.34
CLN3-240ENST00000631023 A0A1W2PPC1 479 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 C17orf102A2RUQ5 167 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 CCNE2O96020 404 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 SMIM10L2AP0DMW4 78 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 SMIM10L2BP0DMW5 78 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 STAT5BP51692 787 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 FPGSQ05932 587 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 BFSP2Q13515 415 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 GNL2Q13823 731 aaKnown RBP23.43■■□□□ 1.34
CLN3-240ENST00000631023 EARS2Q5JPH6 523 aaKnown RBP23.43■■□□□ 1.34
CLN3-240ENST00000631023 LRCH2Q5VUJ6 765 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 CCDC155Q8N6L0 562 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 TEKT3Q9BXF9 490 aa23.43■■□□□ 1.34
CLN3-240ENST00000631023 FAM160B1Q5W0V3 765 aa23.42■■□□□ 1.34
CLN3-240ENST00000631023 ABHD15Q6UXT9 468 aa23.42■■□□□ 1.34
CLN3-240ENST00000631023 PLPPR4Q7Z2D5 763 aa23.42■■□□□ 1.34
CLN3-240ENST00000631023 RETREG2Q8NC44 543 aa23.42■■□□□ 1.34
CLN3-240ENST00000631023 FOXP1Q9H334 677 aaPredicted RBP23.42■■□□□ 1.34
CLN3-240ENST00000631023 RNPEPQ9H4A4 650 aa23.42■■□□□ 1.34
CLN3-240ENST00000631023 SMC3Q9UQE7 1217 aa23.42■■□□□ 1.34
CLN3-240ENST00000631023 BACH1O14867 736 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 CYP2C18P33260 490 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 SLC26A2P50443 739 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 PPIGQ13427 754 aaKnown RBP eCLIP23.41■■□□□ 1.346e-7■■□□□ 11.8
CLN3-240ENST00000631023 CAGE1Q8TC20 777 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 FAM20AQ96MK3 541 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 PCYT2Q99447 389 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 SAMM50Q9Y512 469 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 PCDHA10Q9Y5I2 948 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 NRCAMQ92823 1304 aa23.41■■□□□ 1.34
CLN3-240ENST00000631023 FAM205CA6NFA0 338 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 PITPNM1O00562 1244 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 PSAPP07602 524 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 MARK3P27448 753 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 PTK7Q13308 1070 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 ATP6V0A1Q93050 837 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 IGKV6D-21A0A0A0MT36 114 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 WDR64B1ANS9 1081 aa23.4■■□□□ 1.34
CLN3-240ENST00000631023 MARCH6O60337 910 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms