RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 EARS2Q5JPH6 523 aaKnown RBP20.5■□□□□ 0.87
CLN3-239ENST00000628023 LARP1BQ659C4 914 aaKnown RBP20.5■□□□□ 0.87
CLN3-239ENST00000628023 UIMC1Q96RL1 719 aa20.5■□□□□ 0.87
CLN3-239ENST00000628023 NAP1L4Q99733 375 aaKnown RBP20.5■□□□□ 0.87
CLN3-239ENST00000628023 MTG1Q9BT17 334 aaPredicted RBP20.5■□□□□ 0.87
CLN3-239ENST00000628023 FOXP1Q9H334 677 aaPredicted RBP20.5■□□□□ 0.87
CLN3-239ENST00000628023 JPH1Q9HDC5 661 aaPredicted RBP20.5■□□□□ 0.87
CLN3-239ENST00000628023 IPO5O00410 1097 aaKnown RBP20.49■□□□□ 0.87
CLN3-239ENST00000628023 CCNT1O60563 726 aaKnown RBP20.49■□□□□ 0.87
CLN3-239ENST00000628023 CHMP4BP1P59074 171 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 PURAQ00577 322 aaKnown RBP20.49■□□□□ 0.87
CLN3-239ENST00000628023 PPIGQ13427 754 aaKnown RBP eCLIP20.49■□□□□ 0.876e-7■■□□□ 11.8
CLN3-239ENST00000628023 HSDL1Q3SXM5 330 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 MFSD5Q6N075 450 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 MOXD1Q6UVY6 613 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 TMEM199Q8N511 208 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 SEZ6LQ9BYH1 1024 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 SEMA6BQ9H3T3 888 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 BCAS3Q9H6U6 928 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 SLC9A2Q9UBY0 812 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 DDX25Q9UHL0 483 aaKnown RBP20.49■□□□□ 0.87
CLN3-239ENST00000628023 TBX21Q9UL17 535 aa20.49■□□□□ 0.87
CLN3-239ENST00000628023 DDX39AO00148 427 aaKnown RBP20.48■□□□□ 0.87
CLN3-239ENST00000628023 GCFC2P16383 781 aaKnown RBP20.48■□□□□ 0.87
CLN3-239ENST00000628023 PDCP20941 246 aa20.48■□□□□ 0.87
CLN3-239ENST00000628023 EPHB4P54760 987 aa20.48■□□□□ 0.87
CLN3-239ENST00000628023 NOSTRINQ8IVI9 506 aa20.48■□□□□ 0.87
CLN3-239ENST00000628023 NFASCO94856 1347 aa20.48■□□□□ 0.87
CLN3-239ENST00000628023 DOCK5Q9H7D0 1870 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 A0A0C4DFX4 3053 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 TMEM265A0A087WTH1 108 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 CYP3A7-CYP3A51PA0A087WV96 503 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.47■□□□□ 0.87
CLN3-239ENST00000628023 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.47■□□□□ 0.87
CLN3-239ENST00000628023 EDIL3O43854 480 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 ZNF286BP0CG31 522 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 ATP2B1P20020 1258 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 CYP3A7P24462 503 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 ITGB3BPQ13352 177 aaPredicted RBP20.47■□□□□ 0.87
CLN3-239ENST00000628023 Q4G0T1 1027 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 LENG9Q96B70 501 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 CDX2Q99626 313 aaPredicted RBP20.47■□□□□ 0.87
CLN3-239ENST00000628023 GPR20Q99678 358 aa20.47■□□□□ 0.87
CLN3-239ENST00000628023 NOL7Q9UMY1 257 aaKnown RBP20.47■□□□□ 0.87
CLN3-239ENST00000628023 VPS37CA5D8V6 355 aaPredicted RBP20.46■□□□□ 0.87
CLN3-239ENST00000628023 MSH4O15457 936 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 MARCH6O60337 910 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 PPFIA4O75335 1185 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 PSMC6P62333 389 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 PPP4R3AQ6IN85 833 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 FAM126BQ8IXS8 530 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 KATNAL1Q9BW62 490 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 TBC1D22BQ9NU19 505 aa20.46■□□□□ 0.87
CLN3-239ENST00000628023 KIF28PB7ZC32 967 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 SLC37A4O43826 429 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 GAS7O60861 476 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 ITGA7Q13683 1181 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 BECN1Q14457 450 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 FAM47CQ5HY64 1035 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 UTP14CQ5TAP6 766 aaKnown RBP20.45■□□□□ 0.86
CLN3-239ENST00000628023 LRCH2Q5VUJ6 765 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 SEPT1Q8WYJ6 367 aa20.45■□□□□ 0.86
CLN3-239ENST00000628023 LGALS2P05162 132 aa20.44■□□□□ 0.86
CLN3-239ENST00000628023 HOXD8P13378 290 aaPredicted RBP20.44■□□□□ 0.86
CLN3-239ENST00000628023 TCF7P36402 384 aaPredicted RBP20.44■□□□□ 0.86
CLN3-239ENST00000628023 ACTR2P61160 394 aa20.44■□□□□ 0.86
CLN3-239ENST00000628023 SPRYD3Q8NCJ5 442 aa20.44■□□□□ 0.86
CLN3-239ENST00000628023 MBOAT7Q96N66 472 aa20.44■□□□□ 0.86
CLN3-239ENST00000628023 TEKT3Q9BXF9 490 aa20.44■□□□□ 0.86
CLN3-239ENST00000628023 PPP1R12CQ9BZL4 782 aa20.44■□□□□ 0.86
CLN3-239ENST00000628023 NEMFO60524 1076 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 CD4P01730 458 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 CSF2RAP15509 400 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 U2AF2P26368 475 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-239ENST00000628023 KRT76Q01546 638 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 MFSD10Q14728 455 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 PSRC1Q6PGN9 363 aaPredicted RBP20.43■□□□□ 0.86
CLN3-239ENST00000628023 POTEDQ86YR6 584 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-239ENST00000628023 SLC43A3Q8NBI5 491 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 RIT2Q99578 217 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.43■□□□□ 0.863e-6■□□□□ 10.1
CLN3-239ENST00000628023 ZNF215Q9UL58 517 aaPredicted RBP20.43■□□□□ 0.86
CLN3-239ENST00000628023 TELO2Q9Y4R8 837 aa20.43■□□□□ 0.86
CLN3-239ENST00000628023 CHMP2AO43633 222 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 F2P00734 622 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 MCM7P33993 719 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 TRAPPC10P48553 1259 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 PSEN2P49810 448 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 NBPF20Q3BBV1 942 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 TTC38Q5R3I4 469 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 MIS18BP1Q6P0N0 1132 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 TRIM50Q86XT4 487 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 MAFAQ8NHW3 353 aaPredicted RBP20.42■□□□□ 0.86
CLN3-239ENST00000628023 ETNPPLQ8TBG4 499 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 GLG1Q92896 1179 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 SLC5A5Q92911 643 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 GJA10Q969M2 543 aa20.42■□□□□ 0.86
CLN3-239ENST00000628023 MTIF3Q9H2K0 278 aaKnown RBP20.42■□□□□ 0.86
CLN3-239ENST00000628023 TTYH1Q9H313 450 aaPredicted RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms