RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 NIPA1Q7RTP0 329 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 SERINC5Q86VE9 423 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 REXO1Q8N1G1 1221 aaKnown RBP16.91■□□□□ 0.3
LINC00643-205ENST00000623219 TIFAQ96CG3 184 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 SLC26A6Q9BXS9 759 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 SEMA6BQ9H3T3 888 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 JPH1Q9HDC5 661 aaPredicted RBP16.91■□□□□ 0.3
LINC00643-205ENST00000623219 KCNH7Q9NS40 1196 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 TELO2Q9Y4R8 837 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 SLC4A7Q9Y6M7 1214 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 NFASCO94856 1347 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 EMSYQ7Z589 1322 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 GRXCR1A8MXD5 290 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 BAIAP3O94812 1187 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 GNAT1P11488 350 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 ARHGAP4P98171 946 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 ZNF200P98182 395 aaPredicted RBP16.9■□□□□ 0.3
LINC00643-205ENST00000623219 UTP14CQ5TAP6 766 aaKnown RBP16.9■□□□□ 0.3
LINC00643-205ENST00000623219 TRIM22Q8IYM9 498 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 SEPT1Q8WYJ6 367 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 ATP6V0A1Q93050 837 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 WNT8BQ93098 351 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 FTOQ9C0B1 505 aaKnown RBP eCLIP16.9■□□□□ 0.3
LINC00643-205ENST00000623219 PDRG1Q9NUG6 133 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 PKD2L1Q9P0L9 805 aa16.9■□□□□ 0.3
LINC00643-205ENST00000623219 PBX2P40425 430 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 JAKMIP3Q5VZ66 844 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 CYP2W1Q8TAV3 490 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 CRYGNQ8WXF5 182 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 SLC9A7Q96T83 725 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 SDF4Q9BRK5 362 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 RNPEPQ9H4A4 650 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 SH3GLB2Q9NR46 395 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 ERAP1Q9NZ08 941 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 SLC9A2Q9UBY0 812 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 MSRAQ9UJ68 235 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 ARID2Q68CP9 1835 aa16.89■□□□□ 0.29
LINC00643-205ENST00000623219 GSTTP1A0A1W2PQM5 241 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 MEIS1O00470 390 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CPLX1O14810 134 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 TREHO43280 583 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CAND2O75155 1236 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CXCL10P02778 98 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CYP3A4P08684 503 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 ATP2A2P16615 1042 aaKnown RBP16.88■□□□□ 0.29
LINC00643-205ENST00000623219 ZNF76P36508 570 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 SETQ01105 290 aaPredicted RBP16.88■□□□□ 0.29
LINC00643-205ENST00000623219 ZNF618Q5T7W0 954 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CNKSR3Q6P9H4 555 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CPLX2Q6PUV4 134 aaKnown RBP16.88■□□□□ 0.29
LINC00643-205ENST00000623219 TRAF7Q6Q0C0 670 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 LMBR1Q8WVP7 490 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 CDX2Q99626 313 aaPredicted RBP16.88■□□□□ 0.29
LINC00643-205ENST00000623219 ZNF576Q9H609 170 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 AGO4Q9HCK5 861 aaKnown RBP16.88■□□□□ 0.29
LINC00643-205ENST00000623219 VPS54Q9P1Q0 977 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 NRCAMQ92823 1304 aa16.88■□□□□ 0.29
LINC00643-205ENST00000623219 KIAA1671Q9BY89 1806 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 NBNO60934 754 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 PPFIA3O75145 1194 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 LGR5O75473 907 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 DEXIO95424 95 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 ARP10275 920 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 ADAM17P78536 824 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 SSRP1Q08945 709 aaKnown RBP16.87■□□□□ 0.29
LINC00643-205ENST00000623219 ITGB3BPQ13352 177 aaPredicted RBP16.87■□□□□ 0.29
LINC00643-205ENST00000623219 GPNMBQ14956 572 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 FAM177A1Q8N128 213 aaPredicted RBP16.87■□□□□ 0.29
LINC00643-205ENST00000623219 IL17RAQ96F46 866 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 SMARCAD1Q9H4L7 1026 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 SETD4Q9NVD3 440 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 PCDHA11Q9Y5I1 949 aa16.87■□□□□ 0.29
LINC00643-205ENST00000623219 IGLV3-22A0A075B6J6 115 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 FAM86B1E9PN63 330 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 ADAMTS3O15072 1205 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 FAM86B2P0C5J1 330 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 THPOP40225 353 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 STK3Q13188 491 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 PHOSPHO2Q8TCD6 241 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 MYLIPQ8WY64 445 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 GLG1Q92896 1179 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 LARP6Q9BRS8 491 aaKnown RBP16.86■□□□□ 0.29
LINC00643-205ENST00000623219 ATG2AQ2TAZ0 1938 aa16.86■□□□□ 0.29
LINC00643-205ENST00000623219 COL4A6Q14031 1691 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 RSPH10B2B2RC85 870 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 EFCAB14O75071 495 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 CDKL5O76039 1030 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 RSPH10BP0C881 870 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 FOSL2P15408 326 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 MARK3P27448 753 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 KCNJ6P48051 423 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 ACTR2P61160 394 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 PPFIA1Q13136 1202 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 MBTPS1Q14703 1052 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 ANKRD1Q15327 319 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 PLA2G4DQ86XP0 818 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 RASGRP4Q8TDF6 673 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 NKX2-4Q9H2Z4 354 aa16.85■□□□□ 0.29
LINC00643-205ENST00000623219 AZI2Q9H6S1 392 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms