RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZNF263O14978 683 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 FOSP01100 380 aaPredicted RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 POLR2MP0CAP2 368 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 MYBP10242 640 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ZSCAN20P17040 1043 aaPredicted RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 RPA1P27694 616 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 PPP1R2P41236 205 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 PSMD2Q13200 908 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 COBLL1Q53SF7 1204 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 KSR1Q8IVT5 923 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 PLCD3Q8N3E9 789 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 NAP1L4Q99733 375 aaKnown RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 VCPKMTQ9H867 229 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 MYOZ2Q9NPC6 264 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ZHX1Q9UKY1 873 aaPredicted RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 LRRC53A6NM62 1247 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ARP10275 920 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 H2AFXP16104 143 aaPredicted RBP11.76□□□□□ -0.53
CUX1-221ENST00000622516 ARID5AQ03989 594 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 KCNMA1Q12791 1236 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ADAM9Q13443 819 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ZCWPW2Q504Y3 356 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 LDHDQ86WU2 507 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ERMNQ8TAM6 284 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 CCDC42Q96M95 316 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 SH2D3AQ9BRG2 576 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 NUP58Q9BVL2 599 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 ST7Q9NRC1 585 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 COL4A3BPQ9Y5P4 624 aa11.76□□□□□ -0.53
CUX1-221ENST00000622516 BAG6P46379 1132 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 MMP14P50281 582 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 LRCH2Q5VUJ6 765 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 ANKRD13CQ8N6S4 541 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 DYDC2Q96IM9 177 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 RNF216Q9NWF9 866 aaPredicted RBP11.75□□□□□ -0.53
CUX1-221ENST00000622516 ARHGAP20Q9P2F6 1191 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 DDX41Q9UJV9 622 aaKnown RBP11.75□□□□□ -0.53
CUX1-221ENST00000622516 ABCB11O95342 1321 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 CLIC2O15247 247 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 HOXD13P35453 343 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 MEA1Q16626 185 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 MAEAQ7L5Y9 396 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 DRC1Q96MC2 740 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 KCTD10Q9H3F6 313 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 PIM2Q9P1W9 311 aa11.75□□□□□ -0.53
CUX1-221ENST00000622516 FAM170AA1A519 330 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 NFIBO00712 420 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 SLITRK3O94933 977 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 NR2F2P24468 414 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 CHMP4BP1P59074 171 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 TBC1D10BQ4KMP7 808 aaPredicted RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 MOXD1Q6UVY6 613 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 OTOP1Q7RTM1 612 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 CACNA2D4Q7Z3S7 1137 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 SYT2Q8N9I0 419 aaPredicted RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 CHURC1Q8WUH1 139 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 JDP2Q8WYK2 163 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 FAM20AQ96MK3 541 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 PURBQ96QR8 312 aaKnown RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 NAPGQ99747 312 aaPredicted RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 WRAP73Q9P2S5 460 aaPredicted RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 CDC23Q9UJX2 597 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 GJA3Q9Y6H8 435 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 FGFR1OPO95684 399 aaKnown RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 ATP1A1P05023 1023 aaKnown RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 CIITAP33076 1130 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 EIF4A3P38919 411 aaKnown RBP11.74□□□□□ -0.53
CUX1-221ENST00000622516 CIAPIN1Q6FI81 312 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 JAKMIP2Q96AA8 810 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 CAPZA3Q96KX2 299 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 PARD6BQ9BYG5 372 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 DEF6Q9H4E7 631 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 RABGAP1Q9Y3P9 1069 aa11.74□□□□□ -0.53
CUX1-221ENST00000622516 PIK3CDO00329 1044 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 GCNT3O95395 438 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 RHOXF2BP0C7M4 288 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 ZC2HC1CQ53FD0 456 aaPredicted RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 RSRC2Q7L4I2 434 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 RETREG2Q8NC44 543 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 NEK11Q8NG66 645 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 RHOXF2Q9BQY4 288 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 RANBP17Q9H2T7 1088 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 COL20A1Q9P218 1284 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 CCPG1Q9ULG6 757 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.73□□□□□ -0.53
CUX1-221ENST00000622516 MYH10P35580 1976 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 TBX3O15119 743 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 GAS7O60861 476 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 IPO7O95373 1038 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 NMT1P30419 496 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 CYLC1P35663 651 aaPredicted RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 POLR2FP61218 127 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 GFPT1Q06210 699 aaPredicted RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 PLS1Q14651 629 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 CEP55Q53EZ4 464 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 BANK1Q8NDB2 785 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 AGBL3Q8NEM8 1001 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 IL31RAQ8NI17 732 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 HINFPQ9BQA5 517 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 LSM14BQ9BX40 385 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms