RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TMOD1P28289 359 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 EIF3BP55884 814 aaKnown RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 TTLL6Q8N841 843 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 USP38Q8NB14 1042 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 MTMR8Q96EF0 704 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 NUCKS1Q9H1E3 243 aaKnown RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 CUEDC2Q9H467 287 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 PIH1D3Q9NQM4 214 aaKnown RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 INCENPQ9NQS7 918 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 LRP5O75197 1615 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 TNRC6CQ9HCJ0 1690 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 RAD51CO43502 376 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SMNDC1O75940 238 aaKnown RBP eCLIP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 UQCRFS1P1P0C7P4 283 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 CALM1P0DP23 149 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 CALM2P0DP24 149 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 CALM3P0DP25 149 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 ZNF268Q14587 947 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 STYK1Q6J9G0 422 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 KIRREL3Q8IZU9 778 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 CCDC26Q8TAB7 109 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 THOC1Q96FV9 657 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 PSMD1Q99460 953 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 FAM129AQ9BZQ8 928 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 TMX4Q9H1E5 349 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 NDST4Q9H3R1 872 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SLC39A2Q9NP94 309 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 WNT7AO00755 349 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 KLRC4O43908 158 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SNUPNO95149 360 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 ALADP13716 330 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 CCND1P24385 295 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 INHBEP58166 350 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SEPT2Q15019 361 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 DALRD3Q5D0E6 543 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 METTL24Q5JXM2 366 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SPDYCQ5MJ68 293 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 ERMARDQ5T6L9 678 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 MIS18BP1Q6P0N0 1132 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 LPIN2Q92539 896 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 TAF4BQ92750 862 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SHISA4Q96DD7 197 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 L3MBTL3Q96JM7 780 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 CALR3Q96L12 384 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 XPO6Q96QU8 1125 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 ZKSCAN3Q9BRR0 538 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 TMEM59LQ9UK28 342 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 NOVA2Q9UNW9 492 aaKnown RBP11.85□□□□□ -0.51
UPF3A-212ENST00000619079 PCDHGC5Q9Y5F6 944 aa11.85□□□□□ -0.51
UPF3A-212ENST00000619079 SKAP2O75563 359 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 FGFR1OPO95684 399 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 CSF1RP07333 972 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 CLTAP09496 248 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 KCNA3P22001 575 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MCM7P33993 719 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 IGHMBP2P38935 993 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 PRPHP41219 470 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 RASSF7Q02833 373 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 GRAPQ13588 217 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 UAP1Q16222 522 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 ASTE1Q2TB18 679 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MEI1Q5TIA1 1274 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 PNMA8AQ86V59 439 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 HOOK3Q86VS8 718 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 GRAPLQ8TC17 118 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 CELF1Q92879 486 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 NSRP1Q9H0G5 558 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 KBTBD4Q9NVX7 518 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 SAMD15Q9P1V8 674 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 SIK3Q9Y2K2 1263 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 AKAP11Q9UKA4 1901 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MYH10P35580 1976 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 PHF20L1A8MW92 1017 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 PALMO75781 387 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MBD4O95243 580 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 HOXA10P31260 410 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MAGOHP61326 146 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 ERVK-9P63128 1117 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 FUT2Q10981 343 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MAP3K12Q12852 859 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 TRAF1Q13077 416 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 NAB2Q15742 525 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 IFI16Q16666 785 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 VWA3BQ502W6 1294 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 COBLL1Q53SF7 1204 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 RRAGAQ7L523 313 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 CATIPQ7Z7H3 387 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MICAL1Q8TDZ2 1067 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 UBLCP1Q8WVY7 318 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 ESR2Q92731 530 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 MAGOHBQ96A72 148 aaKnown RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 CRAMP1Q96RY5 1269 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 SALL4Q9UJQ4 1053 aa11.84□□□□□ -0.51
UPF3A-212ENST00000619079 V9GY48 417 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-212ENST00000619079 ANKRD31Q8N7Z5 1873 aa11.83□□□□□ -0.51
UPF3A-212ENST00000619079 LRRC53A6NM62 1247 aa11.83□□□□□ -0.52
UPF3A-212ENST00000619079 F8W031 263 aaPredicted RBP11.83□□□□□ -0.52
UPF3A-212ENST00000619079 PPEF1O14829 653 aaPredicted RBP11.83□□□□□ -0.52
UPF3A-212ENST00000619079 BUB1O43683 1085 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms